Coffea arabica (coffee): 113694273
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Entry
113694273 CDS
T11342
Name
(RefSeq) probable CCR4-associated factor 1 homolog 9
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
carb Coffea arabica (coffee)
Pathway
carb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113694273
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113694273
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113694273
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
113694273
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
113694273
NCBI-ProteinID:
XP_027068975
UniProt:
A0A6P6ST57
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Position
6c:5995549..5996756
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AA seq
293 aa
AA seq
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MSPRFSLLSSPSTTTTTPAADGVLNRQILIRSVWSSNLESEFSLIRHAIDRYPYVSMDTE
FPGVVFRQDFRHGSPTDHYKTLKSNVDALKLIQVGITLSDSHGNFPDLGSPDNYYIWEFN
FSDFDVTRDEHAPGSIDLLRHQGINFEKTRMYGVEASRFAELMMSSGLVCNDDVSYVTFH
SAYDFGYLIKALTGRVLPAELGEFMELLRVFFGKRVYDVKHLMKFCKSLHGGLDRVASTL
EVSRAAGKCHQAGSDSLLTWHAFQRIREVYFNGDEGLPEKYAGVLYGLEVISA
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atgtcccctcgcttctctctactatcgtcgccgtccaccaccaccactaccccggcggcc
gacggcgttctcaatagacagatcttgatccgttctgtctggtccagcaacttagagtcc
gaattttctttgatccgccacgccatcgaccgttacccgtatgtctccatggacaccgag
tttcccggcgttgtcttccgccaagatttccgccacggcagccctaccgatcactacaaa
actctcaagtccaacgtcgacgccctcaagctcatccaggtcggcatcactctctccgac
tctcatggaaacttccccgacctcggctccccagataactactacatctgggagtttaac
ttctccgacttcgacgtcacccgcgacgagcacgctcccggttctatcgatctcttgcgt
caccagggcatcaatttcgagaagactcgtatgtacggagtcgaagcttcccgtttcgct
gagctcatgatgtcctccggactcgtctgcaacgacgacgtctcctacgtcacttttcac
agtgcctacgatttcggctacttgatcaaggccttgacgggtcgcgttctgccggcggaa
ttgggggagtttatggaattactgagggtgttctttgggaagagggtttatgatgtgaag
cacttgatgaagttctgtaagagcctccatggcgggctggaccgagtggcgagcaccctt
gaggtgtccagggccgctggcaagtgtcatcaggcaggttctgatagcctgcttacgtgg
cacgcatttcaaagaatcagggaggtctacttcaacggggatgaggggctgccggaaaag
tacgctggtgttctttatgggttagaggtcatctctgcttga
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