Coffea arabica (coffee): 113695197
Help
Entry
113695197 CDS
T11342
Name
(RefSeq) zinc finger protein JACKDAW
KO
K25870
zinc finger protein IDD3/4/5/6/7/8/9/10/11/12/13
Organism
carb Coffea arabica (coffee)
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
carb03000
]
113695197
Transcription factors [BR:
carb03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
113695197
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C2CH-4th_BIRD-IDD
C2H2-2nd_BIRD-IDD
C2CH-3rd_BIRD-IDD
zf-C2H2
zf-met
zf-C2H2_jaz
zf-C2H2_6
zf-C2H2_STOP2_C
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
113695197
NCBI-ProteinID:
XP_027070014
UniProt:
A0A6P6SVC6
LinkDB
All DBs
Position
6c:3797722..3800584
Genome browser
AA seq
554 aa
AA seq
DB search
MLVMSANMFTVPPSVNGFSPEPADTNPTSSNSNPKSNSTTTNPAGKKKRNLPGNPDPDAE
VIALSPKTLMATNRFICEICNKGFQREQNLQLHRRGHNLPWKLKQRTTKEQVKRKVYICP
EKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYK
CDCGTLFSRKDSFITHRAFCDALAEESARITSVAANNFNFKTDQQHLNGGALLNHPGSFP
HGLSGPSGISQIGVDFATGNQLKPRLSLWLDQASNPQLNHADMPPSQNLYMPSASHHDIM
QMSSAADVFGNYGMPWQQLEKSSAPPSSASSSSAANLSLSPMMPQQVLKDEGAGGSINTQ
TLSSLYSPSAASNNDISHSKSSATPMSATALLQKAAQMGSSKSTAAIFGNGFGIMNPSSS
SSSPAVAANMIAPAAFSSGLAQNRTEMMQVFGKQTDNMMGGGSNMTSSTSSTLTNNLDHQ
PMVQTSTVADSQTVASLGGFHRHPGFNAVVEHASLTRDFLGMGGDGGRPFLPHELAKFAS
MSSAMGLGHFSSNH
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgctagtcatgtctgcaaatatgtttacagttcccccttcagtcaatggcttttctcca
gagccagctgatacgaaccctactagcagtaattccaatcccaaatccaactccaccacc
actaacccagctggcaaaaagaagagaaatctaccaggaaacccagatccagatgctgaa
gttattgctctctcgcccaagacccttatggcaacgaacagattcatatgcgaaatttgc
aacaagggtttccaaagagaacaaaacttgcagcttcatagaagggggcacaatcttcca
tggaagcttaaacaaaggactactaaagagcaagtgaagaggaaggtgtacatatgccca
gaaaagacatgcgtccaccacgacccgtctcgagcactcggggacctcaccgggataaag
aagcacttcagcaggaagcacggggagaagaagtggaagtgtgagaaatgttcaaagaag
tacgcagttcaatcggactggaaagctcattctaagacttgcgggactagagagtataaa
tgcgactgtggaacgctcttttccagaaaagacagctttatcacgcatagagctttctgc
gatgccttagctgaagaaagtgcaagaattacttctgttgcggccaataatttcaacttc
aaaactgatcagcagcatttaaatggtggtgctctgctaaatcatccgggtagttttcct
cacggactgagcggtccgtctgggatttcacaaattggggtagactttgcaactggaaat
cagctcaagcctagactttcattgtggttggatcaagctagcaatcctcagctcaatcac
gctgatatgcccccaagccaaaatctttacatgccctcggcttcacaccatgacatcatg
caaatgtcgtcggctgctgatgtctttggcaattatggcatgccttggcagcagctggaa
aagagtagcgcaccaccgtcatcagcatcatcgtcttccgcagcaaatctctccttatcg
ccgatgatgccccagcaagtcttaaaggatgagggagccggaggcagcattaacacccaa
accctttcttctttgtactcccctagtgctgccagtaacaatgatatcagtcattcaaaa
tcttcggcgacgccaatgtcggccactgcccttctccagaaggcagctcagatggggtca
tctaaaagcaccgcagcaatcttcggcaatggcttcggcataatgaacccctcctcttcg
tcgtcttctcctgctgttgctgctaatatgattgccccagcagcttttagcagtggttta
gcgcaaaataggacagagatgatgcaggttttcgggaagcaaacggacaatatgatgggc
gggggttcgaatatgacttcgtcaaccagttccacgttaaccaataatctggatcatcag
cccatggtgcaaaccagtactgtcgcagacagccaaactgtggcttccttgggcggtttt
catcgtcacccgggattcaatgcagtcgtcgaacacgcaagtctaaccagagattttctt
ggaatgggtggagacggcggacgtcctttcttgccacacgagcttgcgaaatttgcctca
atgagttcagccatgggtttggggcatttcagcagcaatcactag
DBGET
integrated database retrieval system