Coffea arabica (coffee): 113695361
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Entry
113695361 CDS
T11342
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7-like
KO
K14409
protein SMG7
Organism
carb Coffea arabica (coffee)
Pathway
carb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113695361
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113695361
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
113695361
mRNA cycle factors
Common to processing body (P body) and stress granule
113695361
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
AreA_N
K_channel_TID
Motif
Other DBs
NCBI-GeneID:
113695361
NCBI-ProteinID:
XP_071911705
UniProt:
A0ABM4UWP4
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All DBs
Position
6e:19894905..19902577
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AA seq
981 aa
AA seq
DB search
MTIPMDNNPDNSSRERVQKLFNKNVELENRRRKAAQARIPSDPNAWQQMRENYEAIVLED
HAFSEQHEIEYALWQLHYRRIEELRAHFNAAAASVSAGSNTSQNGKGPTRGGPDRLTKIR
TQFKTFLSEATGFYHDLMLKIRAKYGLPLGYFSDDSENQIPLCKDGNKSAEVKKGLISCH
RCLIYLGDLARYKGLYGEGDSKSRDFAAASSYYMQAASLWPSSGNPHHQLAILASYSGDE
LVAIYRYFRSLAVDSPFTTARDNLIIAFEKNRQSFAQLLGDARASSVKTTSVRGNGKGRG
RGESRVASKDNKVEASSVKEKTSTTLETFRAFGIRFVRLNGILFTRTSLETFGDVFALVR
GDLLELLSSGTDEEYNFGSDATDCRLAIVRMVAILIFTIHNVNRETENQSYAEILQRSVL
LQNAFTATFEFMGHILERCSQLNDPSSSYLLPGIMVFVEWLACHQDIAVGSELEEKQASA
RIFFWNNCISFFNRLISSGFMFVDEDEEETCFSNMSRYDESETANRLALSEDFDLRGFVP
LLPAQLILDFSRKHSFRSDSNKEKKARVQRIIAAGKALANVVRIGEEGIYFDTKSKRFVV
GVEPQVSDDFSLTTTLEAPKLSGVVEDNLVSGQMTPRALEQKPQLYMEGEEEDDEVIVFK
PSMTEKHLDGIALNPTSSEVFGSTMNAASIGGDVGSCSIGREGYIAQNAFSASLRPPTSL
VNSSYLQPVQPSTTWMAEQGTLVNGLGNLNLFENGFIKKPESHKHFGALPAQTFPVSLPD
SSFGTGSNFPNQLPETVVPSKLDSIMSLGADNISMKPSSVSPAGLKKNPVGRPLRHLGPP
PGFGSVPSKTVDESLSAMSFKNENATIPQMDDYSWLDGYQLPLVNRSVAGLNSSNHPGQG
YPIGSKSSSSMGMPSFPFPGKQTTTLQVPIENEKSWQDYQFSEQMKLFKEQQQQLQKANQ
QSAVLQQQFQGQSLWEGRFFV
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atgactattccgatggataacaatccagataattcatcaagggagcgtgttcaaaaactt
tttaacaagaatgttgagctggaaaataggcgtcggaaggcagctcaggccagaattcct
tctgacccaaatgcatggcaacaaatgcgagagaactatgaagctattgtcttagaagat
catgccttttctgaacaacatgaaatagagtatgccttgtggcagttgcattacagaaga
attgaggaattgcgagcacacttcaatgctgctgctgcttctgtttcagcaggatcaaat
acatcacagaatggtaaaggtccaacacgtggtggacctgatcgacttacaaagatccgt
actcaatttaaaaccttcctgtcagaggccaccggattttatcatgatttaatgttgaag
attagggcgaagtatggtttgccattgggttatttctccgatgattcagagaatcagatt
cctttatgtaaagatgggaataaatctgcagaagtgaagaaaggattgatatcctgtcat
cgttgtttgatttatctgggggatcttgctcgttataagggcttgtatggtgaaggtgat
tctaaatctcgggactttgcagcagcttctagttactacatgcaagcagcttccctttgg
ccttcaagtggcaatccgcatcaccagcttgctattttggcttcctactctggtgatgaa
ttggtggccatttaccggtattttcgaagcttggcagttgatagtccatttacaacagct
agagataacttgattattgcatttgagaagaatcgtcagagctttgcccagctgctcgga
gatgccagagcttcctctgtcaagacaacttcagtgcgtggaaatgggaaaggaaggggc
agaggtgaaagcagggttgcatccaaggataacaaagtagaagcaagttctgtcaaggaa
aaaacatccaccacattggaaactttcagggcatttgggatacgatttgttcggctaaat
ggcattctcttcacacgcacaagtttggagacatttggggatgtttttgctttggttaga
ggtgatttgctggagcttctttcttctgggactgatgaggagtacaattttgggtcagat
gctactgattgtagactggctattgtcagaatggttgctattctcattttcaccattcac
aatgtgaatagggaaactgagaaccagtcctatgctgaaattcttcaacgctcggtgcta
ctgcagaatgcatttactgctacttttgagtttatgggccacattcttgaacgctgcagc
caattaaatgatccttcatcgagctatctgttacctggtataatggtttttgtggaatgg
ttggcttgtcatcaagatattgcagttggaagtgaattggaggaaaaacaagcgagtgct
aggatatttttctggaacaactgtatctccttcttcaacaggctcatatcttcagggttt
atgtttgttgatgaagatgaagaagagacatgtttttctaacatgagcaggtatgatgaa
agtgaaaccgctaatcggctggcattatctgaggactttgacttgaggggatttgttcct
cttcttcctgcgcaactcattcttgatttttcaaggaagcattccttcagaagcgacagc
aataaggaaaaaaaggcccgtgttcagaggattatagcggctggaaaggctcttgctaat
gtggtccggattggggaagagggaatttactttgacacaaaatcgaagagatttgttgtt
ggcgttgaacctcaagtttctgatgatttttcacttactactactttggaagccccaaaa
ttaagtggtgtagtggaggataatctagtttcaggtcaaatgactcctagggccttggag
caaaagccgcagttgtacatggaaggtgaagaagaggatgatgaggtaattgtgttcaag
ccatctatgactgaaaagcatttagatgggatagctttaaatccgacttcttcagaggtc
tttggatctactatgaatgctgccagtatagggggtgatgttggatcttgctctatcgga
cgtgagggttatattgcacagaatgctttcagtgcaagcttaaggccacctacttccctt
gtgaattctagttatctgcaaccagttcaaccaagtacgacttggatggcagaacaagga
actcttgtgaatgggcttggtaatttgaatttgttcgagaatgggttcataaagaaacct
gaatcgcataaacactttggagctttgccagctcaaacctttcctgtttcccttccagac
tcaagttttggcactggcagcaatttccctaatcagttacccgaaactgtggtaccttca
aagcttgattcaatcatgtctctaggagctgataacatatccatgaagccttcatcagtc
tcacctgctgggttgaagaaaaatccagtaggtcgacctcttcggcatctcggtcctcca
cctggctttggttctgtaccatccaaaactgttgatgagtcactatctgctatgtccttt
aagaacgaaaatgctaccattccccaaatggatgattacagctggctcgatggctatcag
ttgcctctggtcaatagaagtgtggccgggcttaatagttctaatcatccaggacagggt
taccctattggtagcaagagcagcagctcaatggggatgccgagctttccttttcctggg
aagcagacaactacattgcaagtcccaattgagaatgagaagagttggcaggattaccag
ttctctgaacagatgaaactattcaaggagcaacagcagcaacttcagaaagcaaatcag
caatctgctgtgttgcaacagcagtttcagggacaatctctttgggaaggtcgtttcttt
gtgtga
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