Coffea arabica (coffee): 113695828
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Entry
113695828 CDS
T11342
Name
(RefSeq) nuclear pore complex protein NUP205 isoform X1
KO
K14310
nuclear pore complex protein Nup205
Organism
carb Coffea arabica (coffee)
Pathway
carb03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
113695828
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113695828
03036 Chromosome and associated proteins [BR:
carb03036
]
113695828
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
113695828
Chromosome and associated proteins [BR:
carb03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
113695828
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup192
Nup188_N-subdom_III
Motif
Other DBs
NCBI-GeneID:
113695828
NCBI-ProteinID:
XP_027070793
UniProt:
A0A6P6SXR0
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All DBs
Position
6e:complement(6855543..6881612)
Genome browser
AA seq
1878 aa
AA seq
DB search
MVSPKQLLSTVEESLLGPNPPTPAQRVELIHAIRQSLPSLRNLLSYPPPKPSDRAQVHSK
EVRLPNSGSITLDDEDVQIALKLSDDHHLNEIDCVRLLVAANQEWSLLGRDPLEILRLAA
GLWYTERRDLITALYTLLRAVVLDQGLEADLLADIQRYLEDLFNSGVRQRFISLIKELNR
EEPAGLGGPNSECYVLDSRGALVERRAVVCRERVILGHCLVLSVLVVRTGSKDAKDIFAA
LKDNTEDFSQSTDVLKHQVIYSLLFSLVIAFISDALSAVPDKESVLSCDPSFKNDFQKAV
MVTGNDPIVEGFVNCVRLAWAVHLMLTQDGFDVKDTSAAPSSNHAQYICACLDIVFSNNV
FQFWLDKILRTAAFKNDDEDMIYMYDAYLHKMVTCFLSHPLARDKVKETKEKAMNALGAY
RQVGSNDPMVDGGSHSHHSSETTSQPFVSLLEFVSEIYQKEPELLIGNDVLWTFVNFAGE
DHTNFQTLVAFLNMLSTLASSPEGASKVFELLQGKTFRSIGWSTLFDCLSIYEEKFKQSL
QSPGALLPEFQEGDAKALVAYLNVLQKVVENGNPIERKNWFPDIEPLFKLLGYENVPPYL
KGALRNTIATFVKVSPALRDAIWAYLEQYDLPVVIGPQVRNNVQPMPAQIYDMRYELNEI
EARREQYPSTISFVNLLNTLIADETDVSDRGRRFIGIFRFICDHVFGPFPQRAYSDPCEK
WQLVVACLQHFRMILAMYDIKDEDIDSVNPSQQSSVLQSTPLEMQLPVMELMKDFMSGKT
VFRNVMAIILPGVDSIITDRTNQIYGQLLEKAVLLSLEVILLVLDKDVTVSDFWRPLYQP
LDVVLSQDHNQIVALIEYVRYDFQPRIQQCSIKIMSILSSRMVGLVQLLLKSNAAGPLIE
DYAACLELRSESQIVEDSSEDPGVLILQLLIDNIGRPAPNIAHLLLKFDLDSPVERTVLQ
PKFHYSCLKVILDVLEKLSKPEVNALLHEFGFQLLYELCVDPLAGGPTMYLLSTKKYQFF
LKHLDTFAVAPLPKRNNNQALRISSLHQRAWLLKLLAVELHGADMASSHHRDSCQCILAE
LFGLEIPESGIDKNTLQPMILNSSDIAGIRMMGKNKVLGLLEVVQFKSPDNVKSSQAISN
MKYGFMAEEILSNPSAVGKGGIYYYSERGDRLIDLTSFRDKLWQKCNIFNPQLSSFGSEA
ELNELRDVIQQLLRWGWKYNKNLEEQAAQLHMLTGWSQIVEVSASRRISSLQNRSEVLFQ
LLDASLSASASPDCSLKMALMLSQVGLTCMAKLRDERFLWPGGMNADTVAFLDMIMTKQL
SNGACQSILFKLIMAILRHETSETLRRRQYALLLSYFQYCQHMLDPDIPATVLQFLSANE
QDNDLDLEKYDKEQAELARLNFAILRKEAQPILDLVIKDATQGGESGKTMSLYVLDALIS
IDHDKFFLSQLQSRGFLRSCLMSISNVSYQDSRLSLESMQRIYALEGELALLLRISHKYG
KSGAQVLFSMGAVEHLSSCRIFNMQVKGGLRRVDTKFGRDFSVDVDKQRMVIAPILRLVF
SLTSLVDTSDFFEVKNKVVREVIEFVKGNPLLFDQILQENISDVDELTMEQMNLVVGMLS
KVWSYEESGEYGFIQGLFGMMCVLYSHNPEYFSSTESTRFLESKRKAELNRSRLCFSLSS
YLYFMVKQKSLRLQVSDGPTEYRASATRQQPTLTLLGHFLNSLTTALERAAEENCLLLNK
IRDINELSRQEVDEIITMCSRQDCISSSENIQRRRYIAMVEMCQSVADRNRLVTLLLLLA
ENVMNIILVHFQDGQVMKAFTNERKGNFDEDISFLCQKLVPILERLESLTEDKTGHNLKV
FCRLASSLKEISIQKLAM
NT seq
5637 nt
NT seq
+upstream
nt +downstream
nt
atggtgtcgccgaagcagcttttatcgacagtggaagagtcgctgcttggcccaaaccct
ccgacgccggcgcagagagtagaactcatccatgccattcgccaatctcttccctctctc
cgcaacttgctttcttatcctcctccaaaaccatcggaccgagctcaggtgcattctaag
gaagtcaggctgccaaattctggatcaattacgctggatgatgaagatgtccagattgcg
cttaaactcagtgatgatcaccatcttaatgaaattgactgtgttcgcttgcttgttgct
gccaatcaagagtggagcttattagggagagatcctttagaaattttgcgccttgcagca
ggactctggtatacagagagaagggatctaataacagctctttacactttactacgggct
gttgtccttgaccaagggcttgaagctgatcttttggctgacatccagagatacttggaa
gatctatttaattctggagttagacagcgatttatttcattaataaaggaactcaatcga
gaagaacctgcggggttgggtgggcctaattcagaatgctatgttcttgactcaaggggt
gctctagtggaacggcgagctgtggtttgtagagagagggtcattcttggtcattgcctt
gttctttctgttttggtcgtaagaacaggttctaaagatgcaaaagacatctttgctgcc
ttaaaagataatacagaggactttagtcagagcaccgatgttttgaagcatcaggttata
tatagccttcttttctctcttgtgattgctttcatctcagatgctttaagtgcagtaccc
gataaagagtctgtattgtcttgtgacccttcatttaagaacgatttccagaaagctgtt
atggttactggaaatgatccaattgttgagggctttgtcaattgtgtaaggcttgcatgg
gctgtacatttgatgttaacacaggatggttttgatgtaaaggatacttcagctgctcct
tcatctaatcatgcgcaatacatttgtgcatgcttggacatcgttttctccaacaatgtt
ttccagttttggctggataagattcttcgaactgctgcttttaagaacgatgatgaggat
atgatttatatgtacgatgcttacctgcataaaatggttacatgctttctatctcatccg
cttgctagagacaaggttaaagaaacaaaagaaaaagcaatgaatgcccttggtgcatac
cgccaggttggttcgaatgatcctatggtggatggtggctcacattctcatcattcttct
gaaacaacttctcaaccttttgtgtctttgttggagtttgtaagtgaaatttatcagaag
gagcctgagctattgattgggaatgatgtcttatggacatttgtgaattttgctggagaa
gatcatactaattttcaaacgctagtagcatttttaaacatgctgagcactttggcctct
agtccagagggtgcttcaaaagtattcgagttacttcaaggaaaaacatttcgctctatt
gggtggagcactttatttgattgcttgtcaatatatgaggaaaaatttaagcagtccctt
caaagtccaggagccttgttgccagagttccaggaaggagatgcaaaagctcttgttgca
tatttgaatgttctacagaaggttgttgaaaatgggaatccaattgaaaggaagaactgg
tttccagatatcgagcctttattcaagcttcttggttatgaaaacgtccctccttatctc
aagggtgcattgcgtaataccatagctacttttgtcaaagtctctcctgctctaagagat
gcaatttgggcttatttagagcaatatgatctacctgtagttattggtcctcaggtcaga
aacaatgtacagccaatgcctgcacagatatatgatatgcggtatgagttaaatgagata
gaagcaagaagagagcaatatccatctactatatcatttgttaacctactaaatactctt
attgctgatgaaacggatgtgagcgatcgagggcgtagatttattggcattttcagattc
atatgtgatcatgtgtttggaccatttccccagagagcctattcagatccttgtgagaaa
tggcagctggttgttgcttgtcttcagcacttccggatgatacttgccatgtatgatatc
aaggatgaggatattgatagtgttaacccatctcaacaatcatccgtgctgcaatctact
ccacttgagatgcagcttcctgtgatggagttgatgaaagattttatgagtggaaaaact
gtgttccgaaatgtgatggccattattttgcctggtgtcgattctataattacagaccgc
acaaatcaaatttatgggcaactccttgaaaaagccgtcctcctatcattagaagttatt
cttcttgttttggacaaagatgtaactgtatctgatttctggcgcccactatatcagcct
ttggatgttgtactctctcaggatcataatcagatagtggctctcatagagtatgtcaga
tatgattttcagccaagaattcagcaatgttctattaaaattatgagtattctaagttct
cgaatggttggtctagttcaattgcttttaaaatccaatgctgcaggtcctttgattgag
gactatgctgcctgcttggagttacgatctgagtctcagattgttgaggacagcagtgaa
gatcctggcgttctcatattgcaactgcttatagataatattggcaggccggccccaaat
attgctcatctacttctcaagtttgatcttgatagcccggtcgagaggacggtgcttcag
ccaaaatttcactacagttgcttgaaggtcattcttgatgttttggaaaagctgtcaaaa
cctgaggtgaatgcattgcttcacgaatttggctttcagctcctttatgagttatgtgtg
gatccactcgctggtggtcctacaatgtatctgttgagtaccaagaagtatcagttcttt
ctgaagcacctagatacatttgctgttgctccacttcccaagaggaataacaatcaggct
cttcggatcagctctcttcatcagagagcatggttgttgaagcttttagctgttgaatta
catggtgctgatatggctagttctcatcatagagattcatgtcaatgtattcttgctgag
ctatttggcttggaaattcctgagagtggcattgataagaatacactacaaccaatgatt
ttgaacagcagtgatattgctggaattagaatgatgggcaagaacaaggttttaggattg
cttgaagttgtgcagttcaaatccccagacaatgtgaagtcttcacaggccatctctaat
atgaaatatggttttatggctgaggagatccttagcaatccatcagctgttggaaagggt
ggtatttattactactcagagcggggtgatcgcttgattgatcttacttcatttcgtgac
aaactttggcagaaatgtaatatatttaatccccagctaagctcctttggtagtgaagct
gagctaaatgaattgagggatgtaattcagcagttgctgagatggggatggaaatataac
aagaatcttgaagaacaagctgctcagcttcacatgctaacaggctggtctcagattgtt
gaggtctctgcatccagaaggatttcatcgcttcagaatagatctgaagtactatttcag
ttgctagacgcttccctcagtgcttctgcttctcctgactgttcactgaagatggcgctt
atgttgtcgcaggttggtcttacatgcatggcaaaattacgtgatgaacgtttcttatgg
cctggtggtatgaatgccgatacagtcgcttttcttgatatgatcatgacaaaacagttg
tctaatggagcatgccaatctattttattcaagcttatcatggcaattcttagacatgaa
acatcggaaacattgaggagacgccaatacgcattgctcctcagctacttccagtactgt
caacatatgcttgatcctgatattcctgccacagttctgcagttcttatcagctaatgag
caagacaatgatctggatctagaaaagtatgacaaagagcaggctgaattggcacgattg
aattttgctattttacggaaggaagctcaaccaatcctcgatttggtaataaaagatgca
actcaaggtggtgaatctggaaagaccatgtcgctttatgttctggatgcattgatctcc
attgatcatgacaagtttttcctaagccaactacaaagtagaggctttttaaggtcttgc
ttaatgagcatcagtaatgtgtcatatcaggatagccggctttctttggagtcaatgcaa
cggatttacgcacttgaaggagagctggcacttctgttgagaattagccataagtatgga
aaatcaggcgcccaggttctattctcaatgggtgctgtggagcatctttcttcttgtagg
atatttaacatgcaagttaaggggggtctccggcgtgttgatactaaatttggaagggac
ttttctgtggatgttgataaacaacgaatggttattgctccaatactaagattagtattt
tccttgacctcattggttgatacatctgatttttttgaggtgaagaataaagtcgtgcgt
gaagttatagaatttgttaaagggaatccattgctgtttgatcaaattcttcaggaaaac
atttcagatgttgatgaactgactatggaacaaatgaatcttgttgttgggatgctgagc
aaggtttggtcatatgaagagagtggtgaatatggtttcattcaagggctctttgggatg
atgtgtgttctttactcacataatccagaatatttttcttcgacggagtccacacgtttt
ttggagagtaagaggaaggcagaattgaacagatctcgcctttgctttagcttgagctcg
tatctctattttatggtgaaacagaagtccttgagactacaggtgtcagatggtcccaca
gagtatcgtgcatctgccacacgacagcaacctacattgactttgcttggtcatttcctc
aactctttgactactgcacttgaacgagcggctgaagagaattgcttactacttaacaag
atccgagacatcaatgaactatcaagacaggaggttgatgaaataattaccatgtgttct
cgtcaagattgtatttcttcaagtgagaatattcagagaaggaggtatattgccatggtg
gagatgtgtcaatctgtcgcagacaggaatcgacttgttaccctattacttctgcttgca
gaaaatgtgatgaacataatccttgtccattttcaagatggccaagtgatgaaagcattt
acaaatgaaagaaaagggaactttgatgaggacatcagttttctttgccagaagttagtt
ccaattttagaaaggcttgaatcgctaactgaggataaaacgggccacaacctcaaggta
ttttgtagattagcgagttccctcaaggaaatatctattcagaagctggcaatgtga
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integrated database retrieval system
