Coffea arabica (coffee): 113695841
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Entry
113695841 CDS
T11342
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
carb Coffea arabica (coffee)
Pathway
carb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113695841
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113695841
03041 Spliceosome [BR:
carb03041
]
113695841
03009 Ribosome biogenesis [BR:
carb03009
]
113695841
03016 Transfer RNA biogenesis [BR:
carb03016
]
113695841
Enzymes [BR:
carb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113695841
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
113695841
Spliceosome [BR:
carb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
113695841
Complex C
U4/U6.U5 tri-SnRNP related factors
113695841
Ribosome biogenesis [BR:
carb03009
]
Eukaryotic type
Pre-60S particles
Helicases
113695841
Transfer RNA biogenesis [BR:
carb03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
113695841
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
nSTAND3
APG6_N
Motif
Other DBs
NCBI-GeneID:
113695841
NCBI-ProteinID:
XP_027070815
UniProt:
A0A6P6SYB9
LinkDB
All DBs
Position
6e:60445674..60458246
Genome browser
AA seq
995 aa
AA seq
DB search
MEGTPNNGKRKQPEEDLENDENLKQDSASKRRTLSRTCVHEVAVPSGYSLSKNESIHGTL
SNPFYNGEMAKTYPFKLDPFQEVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQ
RVIYTSPLKALSNQKYRELNQEFSDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVL
KEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICNIHKQP
CHVVYTDFRPTPLQHYVFPMGGSGLYLVVDENEQFREDNFVKLQDTFTKQKLGDGNKSAN
SKGSGRIAKAGNASGGTDIYKIVKMIMERKFQPVIIFSFSRRECEQHAMSMSKLDFNTQD
EKDVVEQVFRNAVLCLNEEDRSLPAIELMLPLLQRGIAVHHSGLLPIIKELVELLFQEGL
VKALFATETFAMGLNMPAKTVVFTSVKKWDGDSHRFIGSGEYIQMSGRAGRRGKDDRGIC
IIMIDEQMEMNTLKDMVLGKPAPLVSTFRLSYYSILNLMSQAEGQFTAEHVIKNSFLQFQ
YEKALPDIGKKVSKLEEEAAKLDASGEAEVAEYHKLKLEIAHHEKKLMAEITQPERILYF
LQPGRLVKVREGGTDWGWGVVVNVVKKSPPASGSLPAALASARGNSYIVDTLLHCSLGSS
ENGSRPKPCPPRPGEKGEMHVVPVQLGLVSTISKIRISIPSDLRPLEARQSTLLAVQELG
KRFPQGLPKLNPVKDMGIEDPEIVELVNQIEQLEQKLFAHPMNKSQDEHQLKSFQRKAEV
NHEIQQLKTKMRDSQLQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLV
TELMFNGTFNELDHHQIAALASCFIPGDRSTEQIHLRMELARPLQQLQDSARRIAEIQHE
CKLEINVDEYVEASIRPYLMDVIYCWSKGASFAEVIQMTDIFEGSIIRLARRLDEFLNQL
KAAALAVGEVDLEKKFAAASESLRHGIMFANSLYL
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atggaggggactccgaataatgggaaacgtaaacagcctgaagaagatttagaaaatgac
gagaatttgaagcaggattctgcgtcaaaaaggcgtactttgtctaggacatgtgtccat
gaggtggctgttccgagtgggtatagtttgagtaaaaatgagtcgattcatgggacgctt
tcgaatcctttttataatggggagatggctaagacatatccatttaagcttgatcccttt
caggaagtttctgtggcgtgtttggagcggaatgagtctgttttggtgtcggcacatact
tctgctgggaaaactgctgttgctgagtatgcaattgcaatggcttttagggataagcag
agggttatttatacttctcctctcaaagccctgagcaatcagaagtatagagagttgaac
caggagttttcagatgttggattgatgacaggtgatgtaacactctcgccgaatgcaagt
tgtctggtgatgacaaccgagattctgaggggcatgctctacagaggttctgaggtttta
aaagaagttgcctgggttatatttgatgagattcattacatgaaggaccgtgaaagaggg
gttgtttgggaggaaagtataatatttctacctcctgctatcaagatggttttcttgtca
gctacaatgtcaaatgctacggagtttgcggagtggatatgtaatatacacaaacaaccc
tgtcatgtggtttatacagatttccgaccaacacctttgcaacattatgtgttccctatg
ggcggatctggcctttatcttgttgtggatgagaatgagcaattcagggaggataatttt
gtgaagttgcaagatacatttacaaagcagaagctgggagatggcaacaaaagtgcgaat
tccaaaggaagtggcagaattgcaaaagctggaaatgcttctggtggtactgatatttac
aagattgtcaagatgattatggaacgtaaatttcagccagtaataatttttagcttcagt
agaagagaatgtgaacaacatgcaatgtccatgtccaaacttgattttaacacccaggac
gagaaagatgtggttgagcaagttttccgaaatgcggtgctctgcttgaatgaggaagat
agaagcttaccagcaattgaactgatgttaccactgcttcaaaggggaattgctgttcac
cattctggcctactcccaattatcaaagaattggtggaactcctcttccaagagggactt
gttaaggctctctttgccactgagacgtttgcaatgggattaaacatgccggcaaaaact
gtggtgtttacgagtgtcaaaaaatgggatggtgatagtcatcggttcattggttctggt
gagtatatccagatgagtggaagagctggtcgacgtggcaaagatgatcgaggaatctgc
attataatgattgacgagcagatggagatgaatactcttaaggacatggttttgggcaaa
ccagccccactggtcagcactttcaggcttagctactactctatcttgaacttgatgagt
caggctgagggacaatttacagctgagcatgtgatcaagaattcatttctccaatttcag
tatgaaaaggctttacctgatataggaaaaaaggtatccaagttggaagaggaagctgca
aagcttgatgcctcaggggaggctgaagttgctgaatatcataaactaaagctggagata
gcgcaccatgaaaagaaattgatggctgaaataacacaacctgaaagaattctttatttc
ctgcagcctggaaggctggtgaaggtgcgcgaagggggaacagattggggatggggagtt
gttgtcaatgtggtgaaaaagtccccaccagcatcgggttctttgcctgctgcattggct
tcggctcgtggtaatagctacattgtggatactttgcttcattgctcacttggatcaagt
gaaaatggttctcgtcccaagccatgtccccctcgtcctggagaaaagggagaaatgcat
gtggttcctgttcagttgggcctagtttccaccatcagcaaaatcagaatatcaattcct
tcagatcttcggccacttgaagctaggcaaagtacgctgcttgcagtacaagagctaggg
aaacgttttccacaaggcttgccaaagcttaatcctgtgaaggacatgggcatagaagat
cctgaaattgtggagctggtaaatcaaattgagcaacttgaacagaaattatttgctcac
ccaatgaacaagtcccaagatgaacatcaactgaaaagtttccagcgaaaggcagaagta
aaccatgaaattcaacagttaaagacaaaaatgcgtgattctcagcttcaaaaatttcgc
gatgaactcaagaatcgttctcgtgtattgaaaaagctgggccatattgatgctgatggt
gttgtccagctgaaaggacgggcagcctgcttaatagacacaggagatgaactccttgtt
actgaattaatgttcaatggaacattcaatgagctggaccatcaccaaattgcagctctg
gcaagttgctttataccgggagatagatcaactgagcaaatacatttgagaatggaactt
gctagaccattacagcagctccaggacagtgcaagaagaatagcagagatacaacatgaa
tgcaaattggagataaatgtggatgagtatgtggaggcatccatacgaccgtatttgatg
gatgtaatttattgctggtcaaagggagcatcttttgctgaggtcatacaaatgactgat
atttttgaaggtagcattatacggctagctagaaggcttgatgagtttttaaaccagttg
aaagcagctgcgcttgctgtgggagaagttgatttggagaagaagtttgctgcagccagt
gaaagcctccgccatggtatcatgttcgcaaactctctttatctctaa
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