Coffea arabica (coffee): 113695896
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Entry
113695896 CDS
T11342
Name
(RefSeq) aladin-like isoform X3
KO
K14320
aladin
Organism
carb Coffea arabica (coffee)
Pathway
carb03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
113695896
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113695896
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
113695896
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_Aladin
ANAPC4_WD40
Beta-prop_THOC3
WD40_WDHD1_1st
WD40
Beta-prop_WDR5
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_EML_2
Beta-prop_WDR19_1st
WD40_Prp19
Beta-prop_IFT140_1st
Beta-prop_WDR3_1st
WDR55
eIF2A
Tricorn_2nd
PD40
WD40_MABP1-WDR62_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
Lactonase
WD40_Gbeta
Motif
Other DBs
NCBI-GeneID:
113695896
NCBI-ProteinID:
XP_027070890
UniProt:
A0A6P6SYJ8
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Position
6c:complement(63096448..63108136)
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AA seq
502 aa
AA seq
DB search
MAAFHSASPSSSPLLLLLLIPAVGTKARRERASKIEAFLCSSPTPIPYTPTHSQNPSEKM
ALSYPQPGSVTICEINRDLITADNLSDDRAEETYAKILGTVFSPVPFQYETLLTVEEQEV
AAAAQTKGGLLSAALQAVSTASLRPLFLLTPPVKLLQDVDLYGLSWHQHKNILAFVSGPN
HVTIRDYEDSDGKDPCVLINESQKQVKSLEWRPNGGRMLSVACKGGICIWAASYPGNPAL
VRGGVTSSTLSRGSGTRWTLVDFLQSHDGEQISSLSWSPDGRYLASASFENSSFTIWDVA
QGLGRPIRRGLGGMSLIKWSPSGDYFIAAKFDGTFHIWETNTWTSEPWSSTNGFVTGATW
DPDGQMILIAFSESTTLGSLHFASKPPSLDAHLVPVELQEIQSLTRSKGIEKIAWDGSGE
RLALSFKDGDDLYKGLVAIYDVRRTPLISASLIGFIRGPGVNPKPIALSFHDKFKQGPLL
SVTWSSGMCCTYPLIFRTHVLP
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atggcggccttccactcggcatctccatcttcctctccgctactactgctgctgctcatc
cctgctgttgggaccaaagcgcggcgggaaagagcatcaaaaatagaggcgttcctttgt
agtagtcctactcctataccctacacgcccacacactcacaaaatccatcggagaaaatg
gcgttgtcgtatccacagccaggctccgtcaccatctgcgaaatcaatagagacctcatt
actgccgacaacctgtccgatgatcgggccgaagaaacctatgccaaaattcttgggact
gttttcagtccggttccatttcaatacgagactctattgacggtggaggagcaggaagtt
gctgctgctgcccaaactaaaggtggattgctgtcggctgcactgcaggccgtctccact
gcttctctccgaccccttttcctccttactcctcctgtaaaattgttgcaagatgttgat
ctctatggcctgagctggcaccaacacaaaaatattttggcttttgtttctggcccaaat
catgtgacaattcgcgattatgaggattcagatggtaaggatccttgtgttctgataaat
gaatcccaaaaacaagttaaaagtcttgagtggcggcctaatggtgggaggatgctttct
gtggcatgcaagggtgggatttgcatttgggctgcttcatatcctggtaatccagctttg
gttagaggtggagttacttcaagcaccctttcgagaggctctgggactagatggactctg
gtggatttccttcaaagtcatgatggtgaacaaataagttccctgtcatggagtcctgat
ggaagatatttggcatcagcttcatttgagaattcatcattcaccatttgggatgttgct
caagggctgggcagacctattcgacgtggcttggggggcatgtcactgattaagtggtct
ccttctggagattactttatcgctgcaaaatttgatggaacatttcatatctgggagact
aacacttggacatcagaaccatggtcctcaacgaatggttttgtaacgggagcaacatgg
gatcctgatggacaaatgatactcatcgctttctctgagtctacaacattagggtctctt
cactttgcatcaaagcctccatcccttgatgcacaccttgtacctgtagagttgcaagag
attcagtccttgaccagaagtaaaggaattgagaagatagcatgggatggttcaggagag
cgattggctttgtcattcaaagatggggatgatctgtacaagggtcttgtggcaatatat
gatgttaggagaacccccctgatttcggcatcactaattggatttattagaggccctggc
gttaatcccaagccaattgcactgtcatttcatgacaagttcaaacaagggcccttgcta
tctgtgacttggagcagtggaatgtgctgcacctacccactcatattccgcacgcacgtt
ttaccttaa
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