Coffea arabica (coffee): 113695906
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Entry
113695906 CDS
T11342
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
carb Coffea arabica (coffee)
Pathway
carb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113695906
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
carb03021
]
113695906
03019 Messenger RNA biogenesis [BR:
carb03019
]
113695906
Transcription machinery [BR:
carb03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
113695906
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
113695906
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
zf-C2H2
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
113695906
NCBI-ProteinID:
XP_027070906
UniProt:
A0A6P6SYY4
LinkDB
All DBs
Position
6e
Genome browser
AA seq
1056 aa
AA seq
DB search
MDMESSGRPFDRSRDLGLKKRRLTQDPIPLDRTSNGRSNSSFIQQQRPALPSANSTSVAA
GSRFRVSDRGGADSESSDSVRGPYPQQHLQQQQQILELVNQYKTALSELTFNSKPIITNL
TIIAGENLHAAKAIAATVCANILEVPREQKLPSLYLLDSIVKNIGRDYIKYFASRLPEVF
CKAYRQVDPSIHPGMRHLFGTWKGVFPSPTLQMIEKDLGFVPATNGSSLGTSSRPDAPAA
RPAHSIHVNPKYLEARQRLDLSTRAKGSASDISGNLLNSSEERLERTPGVGSGRPWVDPT
LKNIQHPQREQLSDAPFDDSEYDSLMLKRSGIAIGGAGEKFKEQVFDKTWFESGGVMPAD
QGNGFDVKHGFPRYPALRSVSSANMQPRPIFPSKSTSGMTKSWKNSEEEEYMWDDINSRA
TDQSAINSSGRDRWTPDDSERTSEASADSLSTEQKGQAAIGHRIATSWSQDPVLSEGTSH
LPSSRIMNNSGSYPTSLSGLATAASTVGRPLFHSKIGPGGGGTPGYSFSSATLGPMGSIG
QPRQTLGAASPSAQSPMHQRPSSPSFLVRGANQVAHNLAERDQKPALPPAECRASQYPGH
LNLGANSQPLPSRNAHLANLERQQPPSICALSSVASPHSLLSESIRQTSTSSLPEISGLD
LSSVSKNPFSKDTNAVATQSSTSSLLAAVMKSGILGGNLVSGSVPSLSSQDAGVAATEAS
KQPTLTSHPSTHSTMVGPRISPASVLSQSSNENTSKSSILPQRNGGQLPVPPETLPSSIV
GSALAQPLNAANAVSAPVSSLLSSLVEKGLISASKTESVTSLMPDAPGRSQNQSLEIAST
SSSPISLPLCSSSTKQELPISELTSKAKDVLPESTAAEMKNLIGFQFKADVLREFHPAVI
SELLEDLLFKCSICGLRLKIEEQLNRHLEWHALRDKDKNNLNKESREWYLKSVEWIAGNA
GIVSNNESAGVLEGPSKRSECNEQMVPADESQCLCVLCGELFEDFYSEERDQWMFKGASY
ANVTGITNEGASQDTIVHANCLAKSSLDLDCATNIK
NT seq
3171 nt
NT seq
+upstream
nt +downstream
nt
atggatatggagagttcaggtagaccgtttgatagatctcgagacctagggttgaagaag
cgtaggcttacccaggacccaatcccgctggatcgcacctccaatggccgctccaacagc
tccttcattcagcagcagcgccccgcgctgccgtctgcaaattcgacctccgttgctgct
ggttccagatttcgggtgagcgataggggcggcgctgattccgagagcagtgactcggtg
cggggaccttatccacaacagcacttgcagcagcaacaacagattctggagcttgtgaat
cagtacaagacggccttatctgaactgactttcaattccaagccgattattaccaacttg
actattattgctggggaaaatctccatgctgccaaggccatagcggctactgtctgcgcc
aatatcctcgaggttcctcgtgagcaaaagctcccatctctttatcttttagacagtatt
gtgaagaatattggaagggattacatcaaatactttgcttccaggttacctgaggttttc
tgcaaggcatatagacaggttgatccttcaatacatcctggcatgaggcatctttttggc
acttggaaaggagtatttccttctccaacacttcagatgattgagaaggatcttggattt
gtacctgctactaatggttcttctttaggaacatcatctaggcctgatgctcctgctgct
cgccctgcacatagcatccatgtgaaccccaagtatttggaggcaagacagcgtcttgat
ctgtctactagggccaaaggttctgccagtgatattagtggaaacctgttaaactcatct
gaggaaagacttgaaagaactccgggtgttggctctggaagaccatgggttgatcctact
cttaagaatattcagcatcctcaaagagaacaactgagtgatgccccatttgatgactct
gaatatgattctttgatgttgaagcgatcgggcattgcaattggaggagcaggtgaaaag
ttcaaagagcaggtatttgataagacatggtttgaatctggaggtgtcatgccggctgac
caagggaatggttttgatgttaagcatgggtttccaaggtatccagctctgaggtctgta
agttctgcaaatatgcaacccagaccgatctttcccagtaaaagcaccagtgggatgact
aagagctggaagaactctgaggaagaggagtacatgtgggatgatattaactcaagagcc
actgatcaaagtgcaatcaatagctctggaagagatcgttggacacctgatgattctgaa
agaactagtgaagcttcagctgattctctatccactgaacagaaaggccaagctgctatt
ggacatcgaatagcaacatcatggtcccaggacccggtcctgtcagaagggactagtcat
ttgccttcttccagaatcatgaataattctggaagctatccaacatctctcagtgggttg
gcaactgctgctagtactgtaggtaggcctcttttccattcgaaaatagggcctggtggt
ggcggaacaccaggctatagtttctcaagtgcaacattggggcccatgggatccatagga
caaccacgacagactctgggagctgcatcaccctctgcacagtcccccatgcatcagcgg
ccttcttcaccttcctttttagtacgtggagccaatcaagtagctcacaatttagctgag
cgtgaccaaaaaccagccttgcctcctgcagagtgtagagcttctcaatatccaggacac
cttaatcttggggccaattctcagccattgccatcccggaatgcccatcttgctaatttg
gagagacagcagccaccaagtatttgtgctttgtcttctgtagcatctcctcattctcta
ttgtctgaatctattcgtcaaacatcgacatcatcattgcccgaaatttcaggtttagat
ctctcctcagtgtcaaaaaatccattttccaaagataccaatgcggtggctacacaatca
agcactagtagtttgttggcagctgttatgaaaagcggaatacttggtggtaatcttgtt
agtggaagcgtaccttctctaagttctcaggatgctggagttgcagcaactgaggcaagc
aagcagcctactctaactagtcatccttcaacccactctacaatggtggggcccaggatt
tcacctgcttctgttttgagtcagtcatcgaatgaaaacacgtcaaaatcctcaatttta
ccccagagaaatggtggccaactaccagtgcctcctgagacacttccttcctctatcgtc
ggtagtgccttggcacagcccttgaatgcagctaatgctgtctctgctccagtttctagt
cttttgagttcacttgttgagaagggattgatatctgcatcaaagaccgagtcagtaact
tctcttatgccagatgcacctggtcgatctcagaaccagagtcttgaaattgcaagcaca
agttcatctccaatttccttaccactttgttcctcatctaccaaacaggagctgcctatt
tctgagcttacgtcaaaagccaaggacgtgttgcccgagtccactgcagctgaaatgaaa
aatcttattggttttcaatttaaggcagatgtgcttagggaattccatccagctgtgatc
agtgaacttctcgaggatcttttgtttaagtgtagcatatgtggtcttcggctcaaaatt
gaggagcaactcaacagacacttggagtggcatgctttgcgagacaaagataagaacaat
ttgaataaggaatcaagagaatggtatttgaaatcagttgagtggatagcaggtaatgct
ggtattgtgtctaataatgaatcagcaggggttttggaaggtcccagcaagagatcagaa
tgtaatgagcagatggttcctgctgatgaaagccaatgtttatgtgtgttgtgtggtgag
ctttttgaagatttttacagcgaggaaagagaccaatggatgttcaaaggagctagctat
gccaatgtcactggaattacaaatgagggagcatctcaggacacgatagtccatgcaaac
tgcttagcaaaaagttctcttgatttggattgtgccacgaacatcaagtag
DBGET
integrated database retrieval system
