Coffea arabica (coffee): 113695919
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Entry
113695919 CDS
T11342
Name
(RefSeq) E3 ubiquitin-protein ligase HAKAI homolog
KO
K15685
E3 ubiquitin-protein ligase Hakai [EC:
2.3.2.27
]
Organism
carb Coffea arabica (coffee)
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113695919
04131 Membrane trafficking [BR:
carb04131
]
113695919
04121 Ubiquitin system [BR:
carb04121
]
113695919
Enzymes [BR:
carb01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
113695919
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA processing factors
3' end processing
N6-methyltransferase complex
113695919
Membrane trafficking [BR:
carb04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
113695919
Ubiquitin system [BR:
carb04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
113695919
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-C3HC4_3
zf-RING_UBOX
PRIMA1
Prok-RING_4
IBR
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
113695919
NCBI-ProteinID:
XP_027070927
UniProt:
A0A6P6SYN2
LinkDB
All DBs
Position
6e
Genome browser
AA seq
499 aa
AA seq
DB search
MLQIRLRKPSSEAGGLKPLPADTVTVACPDHLVLADLPVAKCLGSPAATALVKIVGRRSR
RQLGERVHFCVHCDLPIAIYGRLSPCDHVFCLDCARSDSFCFICDERIQKIQTIKLMEGI
FICAAPHCLKSFLKKSDFESHILETHGDLLHPNAEKEGNDSEAASMRKSTASDSTVQAPP
RPMFSMHSNSQVHDRDAHRPQLRDQSISRPFMQPKVMPFFPGQIQNHSSEQLLDNNAPPG
FDRLGSQNRFTQQAFDSPGGIRQDSSQIPEKQQGIRAESPFPEYPMQALQSPGFAGPVNL
NPGLVPPQFVYPHFMPDGAQPFYGAPYDMARPESTPEVGSEQGPLLGFPPGPAGSINFAE
SYPRPWSLGPGVGNFERSPTGQGSVEGFMNNTASDPQGRRPAILQGDYGRNPAALLSNLP
LHPSTNKGMESGQSGTSMDARDGKGILAQPPLPLPPPPPFPPHLAQIKRGKFYSNETNND
GQGFGWPNEKRDSFVSNQE
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgcttcagatccgcctgaggaagccatccagtgaagctggaggtttgaagcccttgcct
gctgacacagtgacagtggcatgccctgatcaccttgtcttagcggatctccctgtagca
aagtgccttggttcacctgctgcaactgcccttgtcaagattgttggtcgtaggtcccgt
cgccaacttggtgaaagagttcatttttgtgtacattgtgacttacccatcgctatctat
ggacgtctgagcccttgtgaccatgtcttctgtctggattgcgccaggagtgattctttt
tgcttcatatgtgacgaacggattcagaagattcagacaattaagttgatggaaggaatc
ttcatttgtgctgcccctcactgtctcaagtctttcctcaagaagtctgattttgagtca
catatccttgagactcatggtgaccttctgcatcccaatgcagaaaaagaaggaaatgat
tcagaggcagcaagtatgagaaaatctacagcctcagattctacagttcaagccccaccg
aggccaatgttttctatgcactcaaattcccaggttcatgatcgtgatgctcatcgtcca
caattgagagaccaatcaatttctaggcctttcatgcagccaaaagtaatgccatttttt
cctgggcaaattcagaaccattcctcagagcaacttcttgataataatgcgcctccaggc
tttgacaggcttggttcacagaaccgctttactcagcaggcttttgattcacctggtggc
atacggcaagattcaagtcagattccagaaaagcagcaaggaataagagcagagtctccg
tttcctgaatatccgatgcaagcccttcaatcccctggctttgctggaccagtgaatctg
aatccaggtttagttccccctcagtttgtttatccccattttatgcctgatggagctcaa
ccattttatggtgcaccatatgacatggcaaggccagagtcaacgccagaagttggatca
gaacaagggccattgttaggctttccacccggtcctgctggtagcataaattttgcggaa
agctatcctcggccctggagtttgggacctggtgttgggaattttgaaagatctcccacg
ggtcaagggagtgttgagggcttcatgaataatactgcatcagatcctcaaggaagaagg
cctgcaattctccaaggggattatggacggaatccagcagctttactttcaaacctacca
ctacatccttccacgaacaaagggatggaaagcgggcaaagtggaacatctatggacgct
cgggacgggaagggcatattagcacagccacctcttcccctcccaccaccacctcctttt
cctccacatttggctcagattaaacgaggcaagttctactccaatgagacaaacaatgat
ggacaaggctttggttggccaaatgaaaagcgtgacagttttgttagtaatcaggagtag
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