Coffea arabica (coffee): 113696034
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Entry
113696034 CDS
T11342
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 11-like isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
carb Coffea arabica (coffee)
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113696034
03041 Spliceosome [BR:
carb03041
]
113696034
03036 Chromosome and associated proteins [BR:
carb03036
]
113696034
Enzymes [BR:
carb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113696034
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
113696034
mRNA cycle factors
Common to processing body (P body) and stress granule
113696034
Spliceosome [BR:
carb03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
113696034
Chromosome and associated proteins [BR:
carb03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
113696034
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
113696034
NCBI-ProteinID:
XP_027071134
UniProt:
A0A6P6SZA7
LinkDB
All DBs
Position
Unknown
AA seq
613 aa
AA seq
DB search
MRSSWADAVENANSGSVENAGTSGASGASATSKSAYVPPHLRSKQPTAEPPAPSHTGPPS
ASDRFGYGGASGGPRYGVPRSDYGRQGYGGGGRGAGGWGSRSGGWSREREVNPFGNDDAD
GLAESTFSEQENTGINFDAYEDIPVETSGDNVPPPVNTFAEIDLGDALNLNIRRCKYVKP
TPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGGFPPRPRGTRTVFPLALI
LSPTRELSMQIHEEARKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLL
ERAKVSLQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGERQTMLFSATFPKEIQR
LASDFLSNYIFLAVGRVGSSTDLIVQRVEFVPESDKRSHLMDLLHAQRANGVHGKQALTL
VFVETKKGADALEHWLCMNHFPATTIHGDRTQQERELALRSFKSGNTPILVATDVAARGL
DIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKTGLATAFFNESNMSLAKSLAELMQEANQ
EVPDWLTRYASRASYGGGKGRRSSGARFGGRDYRRDSSYNRSGGGSDYYGGGGYGNYGNY
GGGYGAGATSAWD
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgaggagttcttgggcagatgctgttgagaatgccaactctggttctgtggaaaatgct
gggacaagtggtgcgagtggagcttccgctacttccaagtcggcctatgtcccgccacac
ctcaggagcaaacagccgaccgctgagcctcctgcaccgtctcatactggcccaccatca
gctagtgataggtttgggtacggtggggcctctggtgggccgcggtatggtgtccctagg
tctgactatggaagacaagggtatggtggtgggggtcgtggggctggcggttgggggagc
agaagtggaggttggagtagggagagggaggtgaatccttttggcaacgatgatgctgat
ggtcttgcggagagcacattcagtgagcaggagaatactggtattaactttgatgcctac
gaggacattccggtggagacaagcggggataacgtgcctcctcctgtgaatacatttgcg
gaaatagatttaggggatgcactcaatttgaatatcaggaggtgcaagtatgtaaaacca
actcctgttcagcgccatgccattcccatctctctagcaggacgagatctaatggcttgt
gctcaaacaggttctggtaagacagctgccttctgcttccctataattagtggaatcatg
aggggaggtttccctccaaggccacgtggaacacggacagtatttccgcttgctctcatt
ctgtcacctacaagagagctctcaatgcagatacacgaggaagctaggaagttttcgtat
caaactggtgttaaggtggtagtggcttatggaggagcaccaataaatcagcagctgcgt
gagcttgagagaggagtcgatattcttgtggcaactccaggaagattagttgatttgctt
gagagggcaaaagtttcattgcagatgattaggtttctcgctcttgacgaggcagatcgg
atgttggatatgggatttgagcctcaaatcagaaagatagtggagcaaatggacatgcct
ccaagaggtgaaagacagacaatgctgtttagtgctacctttccgaaagagatccagaga
ttggcatctgattttctttcaaactacatatttctggctgttggaagggttggctcaagt
acagatttgatcgttcaaagagttgaatttgtgcctgagagtgacaagagaagccacctt
atggatcttcttcatgcacagagggcaaatggtgttcacggcaagcaagccctgacatta
gtatttgtggaaacaaagaaaggagctgatgctctggaacattggttgtgcatgaaccat
tttcctgcaactactatccatggtgacagaacacaacaggaaagagagctagctctgaga
tcatttaagagtgggaatactccaattttagtagcaacagatgtggcagcccgtggtctt
gatataccccatgttgctcatgtaattaactttgaccttccaaatgatattgacgattat
gtacatcgtatagggagaactgggcgtgctggtaagactggattagctacagctttcttt
aatgagagcaatatgtcgttggcaaagtctttagcggaactgatgcaagaggctaaccaa
gaggtacctgattggttgactcgctatgctagtcgggcctcatatggtggaggtaaaggt
cggcggtctagcggtgctcggtttggtgggcgtgactatagaagggattcctcttataat
cgaagtggtgggggatcggattattatggtggaggtggttatggcaattatggcaattat
ggtgggggatatggtgctggagctacaagtgcttgggattag
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