Coffea arabica (coffee): 113696037
Help
Entry
113696037 CDS
T11342
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37 isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
carb Coffea arabica (coffee)
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113696037
03041 Spliceosome [BR:
carb03041
]
113696037
03036 Chromosome and associated proteins [BR:
carb03036
]
113696037
Enzymes [BR:
carb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113696037
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
113696037
mRNA cycle factors
Common to processing body (P body) and stress granule
113696037
Spliceosome [BR:
carb03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
113696037
Chromosome and associated proteins [BR:
carb03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
113696037
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
113696037
NCBI-ProteinID:
XP_027071141
UniProt:
A0A6P6SZL8
LinkDB
All DBs
Position
6e:complement(62895819..62902119)
Genome browser
AA seq
613 aa
AA seq
DB search
MRSSWADAVENANSGSVENAGTSGASGASATSKSAYVPPHLRNKQPTAEPPAPSQTGPPS
ASDRFGYGGASGGPRYGVPRSDYGRQGYGGGGRGAGGWGSRGGGWSREREVNPFGNDDAD
GLAESTFSEQENTGINFDAYEDIPVETSGDNVAPPVNTFAEIDLGDALNLNIRRCKYVKP
TPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGGFPPRPRGTRTVFPLALI
LSPTRELSVQIHEEARKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLL
ERAKVSLQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGERQTMLFSATFPKEIQR
LASDFLSNYIFLAVGRVGSSTDLIVQRVEFVPESDKRSHLMDLLHAQRANGVHGKQALTL
VFVETKKGADALEHWLCMNHFPATTIHGDRTQQERELALRSFKSGNTPILVATDVAARGL
DIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATAFFNESNMSLAKSLAELMQEANQ
EVPDWLTRYASRASYGGGKGRRSSGARFGGRDYRRDSSYNRSGGGSDYYGGGGYGNYGNY
GGGYGAGATSAWD
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgaggagttcttgggcagatgctgttgagaatgccaactctggttctgtggaaaatgct
gggacaagtggtgcgagtggagcttccgctacttccaagtcagcctatgtcccgccacac
ctcaggaacaaacagccgaccgctgagcctcctgcaccgtctcagactggcccaccatca
gctagtgataggtttgggtacggtggagcctctggtgggccgcggtatggtgtccctagg
tctgactatggaagacaagggtatggtggtgggggtcgtggggctggcggttgggggagc
agaggtggaggttggagtagggagagggaggtgaatccttttggcaacgatgatgctgat
ggtcttgcggagagcacattcagtgagcaggagaatactggtattaactttgatgcctac
gaggacattccggtggagacaagcggggataacgtggctcctcctgtgaatacatttgcc
gaaatagatttaggggatgcactcaatttgaatatcaggaggtgcaagtatgtaaaacca
actcctgttcagcgccatgccattcccatctctctagcaggacgagatctaatggcttgt
gctcaaacaggttctggtaagacagctgccttctgcttccctataattagtggaatcatg
aggggaggtttccctccaaggccacgtggaacacggacagtatttccgcttgctctcatt
ctgtcacctacaagagagctctcagtgcagatacacgaggaagctaggaagttttcgtat
caaactggtgttaaggtggtagtggcttatggaggagcaccaataaatcagcagctgcgt
gagcttgagagaggagtcgatattcttgtggcaactccaggaagattagttgatttgctt
gagagggcaaaagtttcattgcagatgattaggtttctggctcttgacgaggcagatcgg
atgctggatatgggatttgagcctcaaatcagaaagatagtggagcaaatggacatgcct
ccaagaggtgaaagacagacaatgctgtttagtgctacctttccgaaagagatccagaga
ttggcatctgattttctttcaaactacatatttctggctgttggaagggttggctcaagt
acagatttgatcgttcaaagagttgaatttgtgcctgagagtgacaagagaagccacctt
atggatcttcttcatgcacagagggcaaatggtgttcacggcaagcaagccctgacatta
gtatttgtggaaacaaagaaaggagctgatgctctggaacattggttgtgcatgaaccat
tttcctgcaactactatccatggtgacagaacacaacaggaaagagagctagcactgaga
tcatttaagagtgggaatactccaattttagtagcaacagatgtggcagcccgtggtctt
gatataccccatgttgctcatgtagttaactttgaccttccaaatgatattgatgattat
gtacatcgtatagggagaactgggcgtgctggtaagactggattagctacagctttcttt
aatgagagcaatatgtcgttggcaaagtctttagctgaactgatgcaagaggctaaccaa
gaggtacctgattggttgactcgctatgctagtcgggcctcatatggtggaggtaaaggt
cggcggtctagcggtgctcggtttggtgggcgtgactatagaagggattcctcttataat
cgaagtggtgggggatcggattattatggtggaggtggttatggcaattatggaaattat
ggtgggggatacggtgctggagctacaagtgcttgggattag
DBGET
integrated database retrieval system
