Coffea arabica (coffee): 113696229
Help
Entry
113696229 CDS
T11342
Name
(RefSeq) transcription elongation factor SPT6 homolog isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
carb Coffea arabica (coffee)
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
carb03021
]
113696229
03036 Chromosome and associated proteins [BR:
carb03036
]
113696229
Transcription machinery [BR:
carb03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
113696229
Chromosome and associated proteins [BR:
carb03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
113696229
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
HTH_44
Tex_central_region
Spt6_S1
HHH_9
HHH_3
SH2
Tex_N
Motif
Other DBs
NCBI-GeneID:
113696229
NCBI-ProteinID:
XP_027071435
UniProt:
A0A6P6T040
LinkDB
All DBs
Position
6c:27505533..27516473
Genome browser
AA seq
1680 aa
AA seq
DB search
MVGKAVISDDEDEVGIEEEERDEEPEDGERIGRGHDDDEEDEDEEEGQDEYEDDGFIVSD
VEEEQEEEEDDRADDGAERQKKKKRKKRESERNYVLDEDDYELLQESNITVPRPKLESKK
FKRLKKAQRDTAEEHSGFSDEEEFDETGRRGRTAEEKLKRSLFGDDDGQPLEDIAEEEQL
EEEDEADMGEEDEMADFIVDEEDSYDEHGAPVRRKKVNKKKARQAPGVSSTALQEAHEIF
GDVEELLRLRKQGLVKMSRHDDSGEWKERRLEDEFEPIILSEKYMTEKDDRIREIDIPER
MQVSEESTGPPPTDEVDDESSWILNQLGNGVLPLSMKGRTDTNEASNEPPIDKNHITRFL
ELMHVQKLDVPFIAMYRKEECLSLLKDPEQPESDNDDQNNSDKKPSLRWHKMLWAIQDLD
KKWLLLQKRKSALESYYSRRYDEESRRVYDETRLNLNQQLFESITKALKAAESDREVDDV
DSKFNLHFPAGEVGADEGQYKRPKRKSQYSICSKAGLWEVANKFGYSSEQFGLQISLQNM
RMEELEDAKESPEEVASNFTCAMFETPQAVLKGARHMAAVEISCEPCVRKHVRSVFMDNA
TVTTTPTADGNAAIDSFHQFAGVKWLKDKPLTRFDDAQWLLIQKAEEEKLLQVTIKLPQA
VLNKLISDSNDYYLSDSVSKSAQLWNEQRKLIIQDAFFNFLLPSMEKEARSWLTSRAKSW
LSMEYGRLLWDRVSVAPYQRKESDSTDEETAPRVMACCWGPGKPATTFVMLDSSGEVIDV
LYAGSLSLRGQNINDQQKKKNDQQRVLKFMMDHQPHVVVLGAVNLSCTRLKEDIYEIIFK
MVEENPREVGHEMDNLNIVYGDESLPHLYENSRISADQLPGQSGIVKRAVALGRYLQNPL
AMVATLCGPGREILSWKLSPFESYLTPDEKYAMVEQVMVDVTNQVGLDVNLAASHEWLFS
PLQFISGLGPRKAASLQRSLVRAGAIFTRKDLLTAHGLGKKVFVNAVGFLRVRRSGLAAS
SSQFIDLLDDTRIHPESYGLAQELAKDVYKMDVGDDINDDDEMLEMAIEHVREKPHLLRA
VHSSEYVAEKGLTKKETLNGIRLELMQGFQDCRRPYVEPSQDEEFYMISGETEETLSEGR
IVQATARRVQPQRATCVLDSGLTGMLTKEDYTDDWRGFDDLTEKLREGDILTCRIKSIQK
NRYQVFLTCRESEMRSNRYQSYREMDPYYHEDRSSLQTEQEKVRKEKELAKKHFKPRMIV
HPRFQNITADEAMEFLSDKDPGESIVRPSSRGPSYLTLTLKVYDGVFAHKDIVEGGKEHK
DITSLLRIGKTLKIGEDTFEDLDEVMDRYVDPLVAHLKAMLNYRKFRKGTKAEVDELLRV
EKSEYPMRIVYSFGISHEHPGTFILTYIRSSNPHHEYIGLYPKGFKFRKRMFEDLDRLVA
YFQRHIDDPHDSTPSIRSVAAMVPMRSPATGGSSGFGGGWSGSSNDGGWRGGQSADRDRG
PRAGRSDYKNGANQDGHPSGLPRPYGGRGRGRGSYDGGRGNNNNSRQDGDYSSQKWGSKD
NDDGWSNFAGAKVQNSPGREAFPGGWGGGGSGSGSGWGSSTADGGSGGWGGGSSGSGWGS
GGAGGNSTGGWGADSGGWAQGSDAGTDAGNSAWGGSKKSSMQAEGGNGGWSGSSGGGSGW
NT seq
5043 nt
NT seq
+upstream
nt +downstream
nt
atggtaggaaaagctgtaatttctgacgacgaagatgaggttggaatcgaggaagaagag
agggatgaagagcccgaggacggggagagaataggccgcggccacgacgacgatgaggag
gacgaagatgaagaggaaggtcaggatgagtatgaggatgatgggtttatagttagcgat
gttgaagaagagcaggaagaggaggaagacgatagggctgatgatggtgcggagagacaa
aagaagaagaaacgcaagaaaagggagtcagagaggaattatgttcttgacgaagatgac
tatgagctccttcaagagagcaatattacggttcctcgaccaaagcttgagagcaagaag
ttcaagcgactgaagaaagcacagagggacacagcagaagagcattctgggttttccgat
gaggaagagtttgatgagacagggaggaggggaagaactgctgaagaaaagctcaaacgc
agcttgtttggtgatgatgatggacaaccgcttgaggatattgctgaagaggagcaactg
gaagaggaggatgaggcagatatgggtgaggaggatgagatggctgattttattgttgat
gaggaagacagctatgatgaacatggagcgcccgtgagaaggaagaaggttaacaaaaag
aaggcccggcaggcaccaggagtttcatcaactgctctccaggaggcacatgaaattttt
ggtgatgttgaggagctcttgaggcttcgcaagcaaggtttggtaaagatgagcaggcat
gatgattctggtgagtggaaggagcgaaggctggaagatgaatttgagcctatcatcctg
tctgagaagtatatgaccgagaaagatgaccggatacgtgaaatagatattcctgaaagg
atgcaggtatcagaggaaagcactggtcctcctcccacagatgaggtagatgatgagagt
tcgtggatacttaatcagcttggtaatggtgtgttacctctgtctatgaaaggaagaaca
gatacgaatgaggcttctaacgagcccccaatagacaagaatcacattacaagattcttg
gagttgatgcatgtccagaaattagatgttccattcattgctatgtataggaaggaggaa
tgcttgagcctactgaaggatccagagcagcctgaatcagacaatgatgaccagaataat
tctgacaaaaaacctagcctgaggtggcacaagatgctttgggccatccaagacttggac
aaaaaatggctgcttcttcagaagcggaagagtgctctggaatcatactatagtagacgg
tatgatgaagaatctcgtagagtgtatgatgaaactcgattaaatttaaaccagcagctt
tttgaatcaattaccaaagcactcaaggcagcagagtcagaccgagaggttgatgatgtt
gactcaaaatttaacctgcattttccagcgggtgaagttggtgcagatgaaggacaatat
aagaggccaaagaggaaatcacaatatagtatatgcagtaaagctggtctatgggaggtt
gcaaacaagtttggctacagctctgagcaatttgggctgcagatatctctgcaaaatatg
agaatggaggaattggaagatgccaaagaatcaccagaggaagttgcctcaaactttaca
tgtgcaatgtttgaaacacctcaagcagtgctaaaaggtgctaggcacatggcagcagtt
gagattagctgcgaaccatgtgttcggaaacatgtgcgtagtgtctttatggataatgct
accgtgacgacaactcctactgccgatggcaatgcagctattgattcttttcatcagttt
gctggagtgaagtggttaaaggataagccacttactagatttgatgatgcacagtggctt
cttattcagaaggctgaggaggagaagctgctacaagttactatcaagctgcctcaagca
gttcttaacaagttgattagcgactctaatgattattatcttagtgacagtgtgagtaaa
tctgctcaattgtggaatgagcagaggaagctgataattcaggatgcctttttcaatttt
cttctcccttcaatggagaaggaagccaggtcttggttgaccagtagagcgaaaagttgg
ttgtctatggaatatggaaggctcttgtgggacagagtttctgtggcgccatatcagcgt
aaagaaagtgacagcacagatgaagaaactgccccccgggttatggcttgctgttggggt
cctggaaagcctgccacaacttttgtgatgttggattcatctggagaggttatagatgtt
ttatatgcaggatctctcagtcttcgtggtcaaaacatcaatgatcaacagaagaagaaa
aatgatcagcagcgggttctaaaatttatgatggaccaccaaccgcatgttgttgttctt
ggagctgtgaatttgtcctgtacaagattaaaggaggatatatatgagataatctttaaa
atggtagaggagaacccgagagaggttggtcacgagatggataacttgaatattgtgtat
ggtgatgaatctctaccacatctgtatgagaattcccgtatctcagctgaccagcttcct
gggcagtcaggtattgtcaaacgggctgtggctcttgggcgctatcttcagaatccatta
gctatggttgctacgctatgtggaccaggaagagagatattgtcttggaaacttagtcct
ttcgagagctatcttactcctgatgagaagtatgctatggttgaacaggtcatggttgat
gtgactaatcaagtgggtcttgatgtgaatttggctgctagccatgaatggttgttttct
cctctgcaattcatatctggtcttggaccgcggaaggccgcatctcttcaaagatcttta
gtaagagctggagctatcttcaccaggaaggaccttttgactgcacatgggcttggtaaa
aaggtgtttgtcaatgctgtaggtttcctccgtgtaagacgcagtggattggctgctagc
agtagtcaatttattgatttattggatgatacaagaatacatcccgaatcctatggtctt
gcacaggagttggcaaaagatgtttataaaatggatgtaggagatgacataaatgatgat
gatgagatgctggagatggctatagagcatgtcagggagaagcctcatctgctaagagct
gtccattcatctgaatatgttgccgagaagggtttgaccaagaaagagacccttaatggc
ataagattggaattgatgcaaggctttcaggattgccgcagaccttatgtagaaccaagt
caggatgaggagttttacatgatttctggagagactgaggaaacactttctgaagggaga
attgtgcaagcaacagctcgcagagttcaacctcagagggcgacttgtgttcttgattct
ggattgacgggcatgttgacaaaggaggactacacagatgactggaggggttttgatgat
ttgactgagaagttgcgggaaggtgatattttaacttgcagaatcaagtcaattcaaaag
aataggtatcaggtctttttaacttgtagagagagtgaaatgagaagtaaccggtatcaa
agctatcgagaaatggatccatactaccatgaagaccgcagtagtttacagactgagcag
gaaaaggttcgtaaggagaaggagctagcgaagaagcattttaaaccaaggatgattgtt
catcctcgtttccagaatatcacagcagatgaggcaatggagtttttgtctgacaaggat
cctggcgaaagtattgtccgtcctagttctcgtggaccctcatatttgaccctcacactc
aaagtctatgatggcgtttttgcacacaaggacatagttgaaggcggaaaggagcacaag
gatataacaagtttgcttaggatagggaaaacattaaaaattggagaggacacatttgag
gatttggatgaggttatggatcgctacgtggatcctttagttgctcatttgaaggccatg
ctgaattaccgtaagttcaggaagggcactaaagcagaagttgatgaactcttgagagtg
gagaaatccgagtatccaatgagaattgtttatagctttggtatatctcatgaacatcct
ggaacatttatcctcacctacataaggagttcaaatccacaccatgagtatattggtcta
tatccaaaggggttcaagttccgtaagagaatgtttgaggacttagatcgccttgttgct
tattttcagaggcatattgatgatccacatgactccacaccgtcaataagatctgtggct
gctatggtgccaatgcgaagccctgcaactgggggctcatcaggatttggtggtggttgg
agtggttcctctaacgatggtggttggagaggtggccagtctgcagacagagataggggt
cctagagcaggaagaagtgattataagaatggtgccaatcaagatggacatccaagtgga
ttgccaaggccatatggcggccgtggtcgtggccgtggctcatatgatggtggtagggga
aataacaacaatagcaggcaggatggagactacagttcgcaaaagtggggctccaaggat
aatgatgatggatggagtaactttgctggtgctaaagttcaaaattcacccggtagggaa
gctttcccaggtggctggggtggtggtggaagtggtagtggtagtggctgggggagcagt
acagcagatggtggtagcggaggttggggtggtggcagcagtggcagtggttggggctct
ggtggtgctggtggcaacagcactggtggttggggtgctgacagtggtggctgggcacag
ggttcagatgcaggtaccgatgctggaaactcagcctggggtggtagcaaaaagagttca
atgcaagctgaaggtggtaatggtggatggtcggggagcagtggtggtggtagtggctgg
tga
DBGET
integrated database retrieval system
