Coffea arabica (coffee): 113697006
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Entry
113697006 CDS
T11342
Name
(RefSeq) uncharacterized protein isoform X1
KO
K15691
E3 ubiquitin-protein ligase RFWD3 [EC:
2.3.2.27
]
Organism
carb Coffea arabica (coffee)
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
carb04121
]
113697006
Enzymes [BR:
carb01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
113697006
Ubiquitin system [BR:
carb04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
113697006
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_RFWD3
zf-RING_2
zf-ANAPC11
zf-RING_UBOX
zf-C3HC4
zf-rbx1
RIMB1_N
Beta-prop_SPT8
RNase_Y_N
zf-RING_11
Pep3_Vps18
zf-C3HC4_4
WDR55
Peptidase_C37
ADIP
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
113697006
NCBI-ProteinID:
XP_027072212
UniProt:
A0A6P6T2I0
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All DBs
Position
6c:complement(4295656..4303443)
Genome browser
AA seq
682 aa
AA seq
DB search
MLTINFLIVKQIQVGFFCVRSIEHEKRGNFFPPTPELHNCKQNPGISMPDDADPDYAMYI
PLIQDPYPMEIDYYDEEQEDEDDDTAAAGTQNVMFPGPAAGRVLEGSGATTTASSQDGLS
YREYQGFRDAPEARDQPSPKKSKRGEATPLKDAKWENPGEGDWHRDELDGLFCPICLEAW
TSGDDHQVCCIPCGHIYGMSCIKRWLKQCGSPGKCPQCNMKCTLEDIRVLYASRIVVVDG
ELQKKVQSLESKCTSLEKKNLIWSKKEKGWQKREADLSMQIQNLREKATYLEGLLENMSI
VQSGLPYTSQDCKGQPLSGICFNTEFGHQECPNGFLLQTDLHIEGARFFDVDVHSQTTMV
ARRLSGLAGPYELTKISLLAPHERENIQLPLSTRVIKDLRVSPHAKLALLASLGKKLYVL
STESNNTIVTYDLPTAAWSCTWDLNNSNYVYAGLQNGMVLEFDLRQTLRPVESMIGLTSN
PIHTVLSLSADFAVNSGIRSVLTASSVGLCHWNFGCSEEKSFLIPESMNEGVCISLAYGP
KCGDIVASFRPRVETAGVNLSPSLSTPSASLLGQGVQGSHVLYKRVGSAQRYHKLRSTSA
SVNDIRLPKSAVVDRVNLKSLYAAGDEVTGDLVLQQLPCLVDVQRLKSRKCVRDVKYSQI
LNSELLSCLSEDTLQLFSSKMS
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgctaaccattaattttttaatagtgaaacaaatacaggttgggtttttctgcgttcgc
tccatagaacacgaaaaaagaggcaattttttccctccaactcctgaacttcacaactgc
aaacaaaatccgggaatctctatgccggatgatgcagacccggattatgcaatgtacatt
ccattgattcaggacccataccctatggaaatcgattactacgacgaagaacaagaggac
gaggacgacgacactgcagctgctgggacgcagaatgttatgtttccgggaccagcggca
ggtagggttttggagggcagtggtgctactacgacggcttcgtctcaggatggtttaagt
taccgtgagtatcagggttttagggatgcacctgaagcaagggaccagcctagtcctaaa
aagtctaaaaggggtgaagcgacaccgctgaaggatgctaaatgggaaaatcctggtgaa
ggagactggcatagggatgagcttgacgggttattttgcccaatctgcctggaggcctgg
accagtggcgatgatcatcaagtctgctgtattccatgtggtcatatatatgggatgtct
tgcatcaaaagatggctgaagcaatgtggaagtccagggaagtgccctcaatgcaacatg
aagtgcacactagaagatatcagagtgctttatgcctcgcgaatcgttgttgttgatgga
gagttgcaaaagaaagttcaatctcttgaatctaaatgcacttccttggagaagaagaat
ctgatctggtctaagaaagaaaaggggtggcagaagagagaagctgatttgagcatgcag
atacagaaccttagagagaaagctacttatttggagggattgttggaaaacatgtcaata
gtgcaatcaggattgccctataccagtcaggattgcaaaggacaacccctttctggcatt
tgtttcaatacagagtttggccaccaagaatgtccaaatggttttctgttgcagacggac
ttacacattgagggtgctcgattctttgatgtggatgttcatagtcaaactacgatggtt
gctcgaaggctttctggcttggcaggaccatatgagcttaccaaaataagcttattggct
ccacatgaaagagaaaacattcagcttcctctaagcaccagagttatcaaggatttacgt
gtttcccctcatgctaaacttgcactattggcttccttgggaaagaaattatacgttctt
agcacggaaagcaacaataccattgtcacatatgacttaccgactgctgcttggtcgtgt
acatgggatctcaataattcgaattatgtatatgctgggttacagaatggcatggtattg
gaatttgatctgcgtcaaactttgagacctgtggaatcaatgattggcttgacaagcaac
ccaattcatactgtgctctctctttcagctgacttcgctgtcaattctggtattagatca
gttctaactgcctcctccgttggtttgtgtcattggaactttggttgcagtgaagaaaag
tcttttttgattccagaatcaatgaatgaaggtgtttgtatatctcttgcttatggtcct
aaatgtggggatattgttgcttcttttcgtcctagagttgagacagcaggagtaaacctt
tcgccttcgttgtccactccatccgcctctctcttggggcaaggagtacagggttctcat
gtcctttacaagagagttggtagcgctcaaagatatcataaattaaggtctacttctgct
agtgtaaatgacattcggctaccaaaatctgctgtagttgacagagtgaatctgaaatcg
ttgtatgctgctggggatgaagtaacaggtgacttggtcttgcaacagttgccttgttta
gtggatgttcagcgtctaaagtctcggaaatgtgttcgtgatgtgaaatactcgcagatc
ctaaactcggagttgctcagttgcttgagtgaggacacattgcagcttttttcgtctaag
atgtcatga
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