Coffea arabica (coffee): 113697074
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Entry
113697074 CDS
T11342
Name
(RefSeq) E3 ubiquitin-protein ligase UPL4 isoform X1
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
carb Coffea arabica (coffee)
Pathway
carb04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
113697074
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
carb04121
]
113697074
Enzymes [BR:
carb01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
113697074
Ubiquitin system [BR:
carb04121
]
Ubiquitin ligases (E3)
HECT type E3
113697074
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_TRIP12_N
HECT
ARM_ARMC5
Arm
HEAT_2
NOMO_6th
Motif
Other DBs
NCBI-GeneID:
113697074
NCBI-ProteinID:
XP_027072325
UniProt:
A0A6P6T2J8
LinkDB
All DBs
Position
6e:2618366..2627412
Genome browser
AA seq
1541 aa
AA seq
DB search
MQMGNRGHKRAETADELPADKRACTLSEFRPSTSNSSIQTPTNSTHETHDADMDSSSATS
GSARSDGEGERDSAYGSCDSDNNYRDYYRRGSSGDQTKFNRVLSSLNEDHDESGQLAALT
ELCELLSFCTDNSLSGLMADSFSPVLVKLARHESNPNIMLLAIRAITYFCDVHPRSSAYL
VRHDAVPALCQRLLAIEYLDVAEQCLQALEKISREQPLACLQSGAIMAVLNYIDFFSTIV
QRVALSTVVNICKKLPSECPSPFMDAVPILCKLLQYEDRQLVESVSTCLIKITERVCHSS
DMLDELCKHGLVQQATDLINLNSRTSLSPPIYLGLIGLLARLASGSIVAVRTLFEINVSS
ILQDIVSRYDLAHGMPFNAMVDGQCNQVHEVLKLLNELLPATTREQDNPLASDKEAFLTS
RPDLMQRFGLDLLPVLITVVNSGVNLYVCYGCLSVINKLVYFSKSDMLLDFLQSTNISSF
LAGVFTRKDHHVLLLALQVVETLLQKLPDGLLDSFIKEGVCFAVDSLLSPKRSSQFMFST
LSAMEYSDDASQKSASRDARCLCFAFDTGQCPTISRTLTCKLDKDSIRNLAEHIKTSYFA
TEAINPEKGLTDILQKLKTLSSVLADLVNTHMNDTISEQHEEEFYCILLEIMSVLAGKDP
ISTFEFVESGIAKSLLNYLSNGQYMERKAGVDGACCQLCIVEKRFELLGNLLLSFRDPHI
ADFPLPALVRRLQSSLASLETFPVILSHSSRVRSSYATVPHGRGTSYPCLKVQFVKGEED
VFLGDYLKDVVNVDPFSTLTAIDGYMWSKVSVNKSEQAKSATLEESSSFRSRSLDSVESN
SMLSHANEMQEERSFSGTGEIASVGDNLVNSADLKDLDNETVEQEQEGSVNKSTDSHGCS
KNEDSSPKLFFNLEGQQLDHRLTLYQAIIQQQLKEEIDSSLSSKLWSQVYKISYRKAVNP
KNNLAEQSSFQGHDFSSSDKATRSCQCVSFFSDIFYSDFADLNKFSPTYDMICLLKSLEG
MNRLRYHVMSRDRMNSFLKCQIDNLYDWKVEAFGVSQSEFVNSKLTEKLEQQMRDPLAVS
VGGMPSWCSQLMASCPFLFGFEARCKYFRLAAFGQPAVRHHVSYNDDVGGINGMRQNSGS
YPRKKFLVHRNRILDSAAQMMNLHAHQRVVLEVEYNDEVGTGLGPTLEFYTLVSYEFQKG
GLCLWREDHAASSCINGSEADNSKILVSPLGLFPRPWLPGVDISNGIQFSEVTKKFVLLG
QIVGKALQDGRVLDLPFSKAFYKLILGKELTVYDIQSFDVELGRVLLEFQALIERKRYLE
SISPGKSSMDLDFFHGTRIEDLCLDFSLPGYPDYVPESVSDSKMVKMSNLQEYISFVVDA
TIRTGISRQVEAFKSGFDQVFPIRHLQVFTEGELERLLCGERELWDSNALVDHIKFDHGY
TASSPPILNFLQIIQEFNYEQQRSFLRFVTGAPRLPSGGLASLNPKLTIVRKHCSKWVDT
DLPSVMTCANYLKLPPYSSKERMKEKLLYATTEGQGSFHLS
NT seq
4626 nt
NT seq
+upstream
nt +downstream
nt
atgcaaatgggaaatcgtggtcataaaagagctgaaacagctgatgagttgccggcagat
aagcgagcctgtactttgtcggagttccgaccaagtacctcaaattcatcaattcaaaca
ccaacaaattcgactcatgaaacacatgatgctgatatggattcatcatcagcaacttca
gggtcagcacgatcagatggtgaaggggagagggactctgcatatggctcttgtgattcg
gacaataactaccgcgattactataggcgaggatcttctggtgatcaaaccaagttcaac
agagtcttgtccagtttaaatgaagaccatgacgaatcagggcagttagctgcccttacc
gaactctgtgaattgttgtctttttgtaccgataattcattatctggtctaatggcagat
tcattctctccagtcctcgtaaaattggccaggcacgagagcaatcccaacataatgctt
ttggccattagggctataacttatttttgtgatgttcatccacgctcttcagcttatctg
gttagacatgatgcggttcctgctctatgtcaaagattgctggccatcgaatacttagat
gtagctgaacaatgtttgcaagcattggagaaaatttcacgtgagcagccacttgcttgc
ttgcaatctggtgcaattatggctgttttaaactatattgatttcttctcaacaattgtg
cagagggttgcactgtccactgtggtaaatatatgtaagaagcttccctctgaatgccct
tcaccattcatggatgcagttccgatattgtgcaaacttcttcaatacgaggatcggcag
cttgttgagagtgtttctacttgcttgattaaaataacggaaagagtatgccacagctct
gatatgctggatgaactttgtaaacatgggctggttcaacaagccacggatctcataaac
ttgaatagtcgaacttcattgtcccccccgatatatcttggtttgataggattgcttgcc
agactggcatctggttctattgttgctgtcaggactctttttgagattaatgtaagcagc
atattgcaggatatagtgtctagatatgacctcgcacatggcatgccttttaatgcaatg
gttgatgggcaatgcaatcaggtgcatgaagttttgaagttgctgaatgagcttcttcct
gccaccaccagagagcaggataatccactagcttcagacaaggaagcattcttgactagt
cgacctgatctcatgcaaaggtttgggttggatttacttcctgttctgatcacggtggtt
aattctggtgtgaatttatacgtttgttatggatgtttatccgttatcaacaagttagtt
tatttcagcaaatctgacatgcttctagacttccttcaaagcaccaacatctcaagtttc
ttggcaggagtgtttaccaggaaggatcatcacgtgcttctgttagcacttcaagttgtt
gagacacttctgcaaaagctgcctgatggtttattggattcttttataaaggaaggtgtc
tgctttgctgttgattcgcttttatccccaaaaaggtcgtcgcagtttatgttttctaca
ttaagcgccatggagtactctgacgatgcaagccaaaaatcagcttcaagggatgctaga
tgcctatgttttgcttttgatactggtcagtgtccaacgatttcgaggactttaacttgc
aagcttgacaaggattccattaggaatctcgcagagcatataaagaccagttattttgca
acagaggccattaaccctgagaaaggactgacagatattttgcagaagcttaaaacttta
tcttctgtattggctgatctggtgaacacacacatgaatgacacaatttctgaacaacat
gaagaagagttctattgtatattgttggagattatgtcagttcttgctggaaaagatccc
atttccacttttgagtttgttgagagtggaattgcaaagtcattgcttaattacctatct
aacgggcaatatatggaaaggaaggctggtgttgatggggcatgctgtcagctgtgcatt
gtagagaaaagatttgagttgttaggaaatctacttttgtcttttcgagacccacatatt
gcggactttcctcttcctgctttggtccgtagattacagagctcgctggcttccttggaa
acatttcctgtcatcttgagccactcatccagggttagaagttcctatgccactgttcca
catggacggggcacttcatatccttgtctgaaagttcagtttgtgaagggagaggaagat
gtatttctgggagattatttaaaggatgttgtaaatgtcgaccccttctcaaccttgaca
gcaatcgatggatacatgtggtcaaaggtgagtgtaaacaaaagtgagcaagcaaaatca
gccaccttggaggagagttcgtcttttcgaagcagaagtctcgatagtgtggaatcaaat
agcatgttaagtcatgcaaatgaaatgcaggaagagagatctttctctggcacgggagaa
atagccagtgttggtgataatcttgtgaattcagcggatttgaaagacttggataatgag
actgtggagcaagagcaagaaggatctgttaacaaaagtacagacagtcatggatgcagc
aaaaatgaagattcttcaccaaaattgttttttaacttagaagggcagcagttggaccat
cgcttgacactctatcaagccatcatccagcaacaattgaaagaagaaattgatagttct
ttgagtagtaaattgtggagtcaagtgtacaaaatttcttacagaaaagctgtcaatcct
aagaataacttagctgaacagtctagttttcagggtcatgatttttcttcatcagacaaa
gctacacgaagctgccagtgcgtttcttttttctctgacatcttttattcggattttgct
gatctcaataagtttagtccaacttatgatatgatatgtctgctcaagagtttggaaggc
atgaacaggttaagatatcatgtgatgtctcgcgatagaatgaatagttttttgaaatgc
caaatagataatttgtatgactggaaggttgaagcttttggtgtttcccagagtgagttt
gtgaatagtaagctcacagaaaaattagaacagcagatgcgtgatcctttagcagtgtct
gttgggggcatgccatcgtggtgttcccagttaatggcttcgtgtccttttttatttgga
tttgaggcaagatgcaaatattttcgtctagctgcatttggccagcctgctgttagacac
catgtatcatataatgacgatgtaggtggcatcaatggcatgaggcaaaatagtggcagc
tatcctcgtaaaaagtttttggttcaccgaaacagaattctcgactctgctgcccagatg
atgaatctccatgcacatcaaagggtagtcctggaggtggaatacaatgatgaagttgga
actggtcttggtccaacactagagttctacacgttggtcagttatgagtttcagaagggt
ggcctgtgcttgtggagggaagatcacgcagcaagtagttgcatcaatggctcggaggct
gataattctaagattttggtgtctccattgggactttttcctcgtccttggttacctggg
gtggacatatctaatggcatacagttttctgaagtgaccaaaaagtttgtccttttgggg
caaatagtgggtaaggctcttcaagatggaagagttttggatcttcctttttccaaggcc
ttctataaactcatccttgggaaggaactcacggtttatgacatccagtcctttgatgtt
gaacttggtagagttcttttggaatttcaggctcttattgagagaaagaggtatttagaa
tctattagtccgggaaaatcatctatggatttggacttcttccacggcacaagaattgag
gatctttgccttgactttagccttccggggtatccagattatgtgcctgagtctgtttct
gactcaaaaatggtgaagatgtcaaacctacaggagtacatatcgtttgttgtcgatgct
accataagaacagggatttccagacaagtagaagcttttaagtcaggttttgatcaggtt
ttccccatcagacaccttcaggtgttcactgaaggtgaattagagcgcttattatgtggg
gagcgtgagctttgggattcaaatgcgcttgtggaccacatcaaatttgatcatgggtat
actgctagtagtcctcctatcctgaattttctgcaaattatacaagagttcaactatgag
cagcagagatcattcttgaggtttgtgacaggagcacctcggctcccttctggggggctg
gcatctctcaacccaaaattgactattgtccgcaagcattgtagcaaatgggttgacact
gacttgccaagcgtgatgacctgtgcaaattacctgaagctgccaccttactcatcaaaa
gaacggatgaaagagaagcttctgtatgccacaacagaaggacaaggctctttccacctc
tcatag
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integrated database retrieval system
