KEGG   Coffea arabica (coffee): 113697076
Entry
113697076         CDS       T11342                                 
Name
(RefSeq) TATA-box-binding protein-like isoform X1
  KO
K03120  transcription initiation factor TFIID TATA-box-binding protein
Organism
carb  Coffea arabica (coffee)
Pathway
carb03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:carb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    113697076
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:carb03000]
    113697076
   03021 Transcription machinery [BR:carb03021]
    113697076
Transcription factors [BR:carb03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   TATA-binding proteins
    113697076
Transcription machinery [BR:carb03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     113697076
  RNA polymerase III system
    TFIIIB
     113697076
  RNA polymerase I system
    SL1/TIF-1B
     113697076
SSDB
Motif
Pfam: TBP DUF3378 DUF4295
Other DBs
NCBI-GeneID: 113697076
NCBI-ProteinID: XP_027072330
UniProt: A0A6P6T2K3
LinkDB
Position
1e:256441..262088
AA seq 203 aa
MADPQGGGFEGSQPVDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRF
AAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQN
IVASCDVKFPIRLEGLAYAHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKV
RDETYTAFENIYPVLTEFRKNQQ
NT seq 612 nt   +upstreamnt  +downstreamnt
atggcagatcctcagggtggcggctttgaagggagccaaccggtggatctctccaagcac
ccttctggaattgtccctactctccagaacattgtgtcaactgtcaacctggactgcaaa
ttggatctcaaagcaattgctctgcaggctcgaaatgcagagtacaacccaaagcgtttt
gctgctgttatcatgaggattagagaacccaaaacgacagcactcatttttgcttctgga
aagatggtctgtacaggagcaaagagtgagcagcagtcaaaattggcagctcggaagtat
gctagaattatccaaaagcttggatttcctgcaaagtttaaggatttcaagattcagaac
atagttgcctcatgtgacgtgaaatttcctattagacttgaaggccttgcctatgcccat
ggtgctttttcaagttatgaacccgaactgttcccgggattaatctatcggatgaaacaa
ccaaaaattgttttgcttatctttgtttctggaaagattgttctcactggtgcaaaggtt
agggatgagacttacactgcctttgagaacatatatcctgttcttactgagttcagaaag
aatcagcaatga

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