Coffea arabica (coffee): 113697096
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Entry
113697096 CDS
T11342
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
carb Coffea arabica (coffee)
Pathway
carb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113697096
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
carb03041
]
113697096
03009 Ribosome biogenesis [BR:
carb03009
]
113697096
Enzymes [BR:
carb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113697096
Spliceosome [BR:
carb03041
]
Complex A
U1 snRNP components
U1 related factors
113697096
Complex B
113697096
Ribosome biogenesis [BR:
carb03009
]
Eukaryotic type
Pre-60S particles
Helicases
113697096
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
113697096
NCBI-ProteinID:
XP_027072357
UniProt:
A0A6P6T2X5
LinkDB
All DBs
Position
6e:16768234..16775425
Genome browser
AA seq
1165 aa
AA seq
DB search
MATAEAAPASLGPRYAPEDPTLPQPWKGLIDGSTGVLYYWNPETNVTQYEKPTAVAPPLP
PGPPPSASTPTLAPIPGARTTQASEVQNQQMQAQQQVQQVNPHLQQQQQQALISPHIVQR
HSSQIPPTGQQQGSQLVPSVEQQGQLTPQHLRPQMLQYVGQSTPSQSGQVQVPPGSHAPQ
QPMQQMGQQTLMYQGPPGGNPQTHQFPHQQTQYMPYQQNVLQHGHQNSQQQTLQRHHFSH
QQDHKMGFPPREDIDSQQGKQVGHSPAQIQSSASSSIQNLPAGSSSMQAPQMGVQPNQAM
QFGGSSVNMQQPASLLQLQQGATDLLQPQHGSRFQNQMGPSMMHAQQPKVPPFGPNVGYD
GSPLGRAGNDLYYNSNKDGHVMAPQQPKLAAIPMARNNQEMRRGDVHLQNVVPSHPGGLS
GVTGPPMHDLYGHATGGPLFPNDSFTRPPPGIIGPSDANATHLSPADVYRQKHEVTATGD
NVPAPFMTFEATGFPPEILREIQLAGFSFPTPIQAQTWPIALQSRDIVAIAKTGSGKTLG
YLIPAFMHLRRLHNNPQYGPTVLVLAPTRELATQIQDEAIKFGRSSRVTCTCLYGGASKG
PQLKELERGADIVVATPGRLNDILDSKRIDFRQVSFLVLDEADRMLDMGFEPQIRKIVNE
IPPRRQTLMYTATWPKEVRKIANDLLVNPIQVNIGSVDELAANKSITQYVEVVPQMEKQR
RLEQILRSQERGSKIIIFCSTKKLCDQLARSIGRNFGAAAIHGDKNQGERDWVLNQFRSG
KTPILVATDVAARGLDIRDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFSEQDW
KYAADLVKVLEGADQQVPPEVKDMALRGAPSFSRDRGGINRFDSADVDGGGGGGRWESGG
HGGMRDFGFGGRGGMRDSGFGGRGGVRDGGFGGRGGMREGGFGGRGGFGNRGGMRYGSFG
GRGGRDGGFGGGGGGPGGWDRNDRYSMDGRGRGRGRGRGRFDNRREIGDRSRGRSYSSSP
ERVRTWGYSRSRSRSRSRSRSRSRSRSRSYSRSHSRSRSWSRSHSPRRSRSRSRSRSPSY
ERYERRRRKTKFDQMDVNVPNADVPSESGMSPMSPGRQGNGFSGSGAMPAPAPAPAPAVQ
VPFISSTDPGTTGSHPSNPGIDPEV
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atggcgactgctgaggcagcaccagcgtcactagggccacgctatgctcccgaagatcct
actctgccacaaccttggaagggattaattgatggtagcacgggtgttttatactactgg
aatcctgaaactaatgttacgcaatatgaaaagcctactgctgttgctcctccattgccc
cccggtccacctccttcagcttctacccctactttggctccaattccaggcgctaggact
acccaagcaagtgaagtccaaaaccagcaaatgcaggcccaacaacaagtacaacaagtg
aatcctcatttgcagcagcagcagcaacaagcactgatatcacctcatattgttcaacgg
catagctcgcaaataccaccaactgggcagcaacagggttcacagttggttccttctgtg
gaacaacaggggcagctaacaccacagcaccttaggccacagatgttgcaatatgttggt
caatcaactccatcgcagtcgggacaagtacaggtccctcctggatcacatgctccacaa
caaccaatgcaacaaatgggccagcaaactctcatgtatcaaggtccacccggagggaat
ccacagacccatcagtttccccaccaacagactcagtatatgccatatcaacagaatgta
cttcagcacggacatcaaaattcacagcaacagactctccaaaggcaccacttttcccat
caacaggatcacaagatggggttcccacctcgggaggatattgattcacaacaaggaaag
caagtgggacattcacctgcacagattcagtctagtgcttcatcctcaattcaaaatctt
cctgctggtagtagttccatgcaggcacctcagatgggtgttcaacctaatcaagctatg
cagtttggtggctcctcagtcaacatgcagcagcctgcatctttattacagttgcagcag
ggtgcaacggatttgcttcaacctcagcatggctcgaggtttcagaatcagatgggcccc
tcaatgatgcatgcccaacagccaaaggtacccccatttggaccaaatgtgggctatgat
ggaagccctcttggaagagctggaaatgatttgtattataactctaacaaggatggccat
gtgatggctcctcagcagcccaagcttgctgcaataccaatggcaagaaataatcaggag
atgaggaggggggatgttcaccttcaaaatgtcgtaccaagtcatcctgggggactgagt
ggtgtaactgggccacctatgcatgacttatatggtcatgcaactggtggtccactattt
ccgaacgattctttcacaaggcctcctccaggcattataggaccctcagatgctaatgca
actcatctctcgcctgctgatgtttatcgccaaaagcatgaagtaacagcaacgggggac
aatgttcctgctccattcatgacttttgaggccactggtttcccaccagaaatactgagg
gagatacagttggctggtttctcttttcccacaccaattcaggcacaaacttggccaatt
gctttacaaagcagggacatagttgcaattgcaaagacaggttctgggaaaacattggga
tacttaatccctgcattcatgcatctcagaagactccacaacaatccccagtatggcccc
actgtgttggttttagctccaactcgtgagcttgccacacaaatacaggatgaagctatc
aagtttggtcgatcttccagagttacttgcacatgcctgtatggcggtgcttccaaaggc
cctcagctaaaagaactggagaggggagcagatattgttgttgccactcctggtcggttg
aatgacattcttgatagcaagaggattgattttcggcaggtctcttttcttgtgcttgat
gaagctgatcgaatgcttgacatgggttttgaacctcagattcgcaagattgttaatgaa
ataccaccacggagacaaacgctcatgtacactgctacttggcctaaagaagtgagaaaa
atagcgaatgatcttcttgttaatccaatacaggtgaacattgggagtgtagatgaactt
gctgccaataagtccatcacacagtatgttgaagtggtccctcaaatggagaagcagaga
cgcttggagcaaattcttagatcccaagaacggggttccaaaattatcatcttctgttca
acaaaaaagttgtgtgatcagctggcacgtagtattggtcgcaactttggggctgctgca
attcatggagacaagaatcagggcgagagggattgggttctgaatcaatttcgatctggg
aagaccccaatcttagtggccactgatgttgcagcacgtgggcttgatatccgagacata
agggttgtcatcaattatgacttcccaacgggcattgaagattacgttcaccgcattgga
agaactggcagggctggtgctacaggtgtgtcttacacctttttctctgagcaggattgg
aaatatgctgcagatctagttaaagtattggagggggcagatcagcaagtaccgccagaa
gtaaaagatatggctttacgaggtgcaccaagcttcagcagggatcgaggtgggataaat
cgttttgattctgctgatgttgatggtggtggtggtggtggacgttgggaatctggtggc
catggtgggatgagggattttggctttggtggccgaggtgggatgagggatagtggcttt
ggtggccgtggaggggtgagggatggtggctttggcggtcgtggtgggatgagggaaggt
ggctttggtggccgtggtggctttggcaaccgtggtgggatgaggtacggtagttttggt
ggccgtggagggagagacggtggatttggtggtggtggtggtggccctggtggttgggat
aggaatgatcgttatagcatggatgggcgagggcgtggtaggggacgtggacggggccga
tttgataatagaagagagattggagatagaagtagaggcagaagctacagctccagtccc
gagagggtacgaacgtggggttatagcaggagcaggagcaggagcaggagccgaagccga
agccgaagccgaagcaggagtagaagttacagtcggagccacagtaggagtagaagctgg
tcacgcagccatagcccaaggcgcagccgaagccgaagccgcagccgcagccccagctat
gagagatatgagaggcggcgacgcaaaactaagtttgatcagatggatgtaaacgttcca
aatgctgatgttccttccgagtcaggtatgtctcccatgtctccaggcagacagggcaac
ggattttctgggtctggggctatgcctgcgcctgcgcctgcgcctgcgcctgctgtgcaa
gtaccttttatttcaagcactgatcctggcaccactggatctcatcctagcaatccaggc
atcgatccagaggtttga
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integrated database retrieval system
