Coffea arabica (coffee): 113697333
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Entry
113697333 CDS
T11342
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
carb Coffea arabica (coffee)
Pathway
carb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113697333
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
carb03041
]
113697333
Spliceosome [BR:
carb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
113697333
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WD40_Gbeta
EIF3I
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_2nd
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
ANAPC4_WD40
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_Aladin
PRP4
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_SCAP
Beta-prop_Vps41
Beta-prop_RIG_2nd
Beta-prop_DCAF4
Beta-prop_WDR41
WD40_RFWD3
eIF2A
Beta-prop_Nup120_160
WD40_like
Tricorn_2nd
Motif
Other DBs
NCBI-GeneID:
113697333
NCBI-ProteinID:
XP_027072713
UniProt:
A0A6P6T322
LinkDB
All DBs
Position
6c:18327194..18331603
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AA seq
578 aa
AA seq
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MEVDEENSVSTSVTEPMTVEADGNQTVVSGVGGISLQPVTASVPPTIPPPPVIPSIASGP
IVPPIPRPLAPIPVRPPVLRPPVAQNGETRGSGSDSDEDEAGPSRGTTGASAEYEISEES
RLVRERQEKAMQELLMKRRAAALAVPTNDMAVRARLRRLGEPITLFGEREMERRERLRNL
MAKLDSEGQLERLMKAHEDEEASGSATQGEGLEEDIEYPFYTEGSKALLDARVDIAKYSI
VKAALRLHRARRKRDDPDEDLDAEIDWALKQAGNLVLECSEIGDDRPLSGCSFSCDGKML
ATCCLSGVARTWSMPEVKKVSTLKGHTERATDVAFSPTGDQLATASADRTAKLWNKEGSL
LNTYKGHLDRLARIAFHPSGKYLGTASFDKTWRLWNVETGEELLLQEGHSRSVYGISFQN
DGSLAASCGLDALIRVWDLRSGRSILALEGHVKPVLGVSFSPNGYHLASGGEDNTCRIWD
LRKRKSLYIIPAHSNLISQVKFEPQEGYFLVTGSYDTTAKVWSSRDFKPIKTLSGHEAKV
TSLDVVGDGQYIATVSHDRTIKLWSGRNSEKEKTMDVD
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atggaagtagacgaggagaatagtgtttcaacttcagttacagagcctatgaccgtagaa
gctgatggtaatcagaccgtggtatctggagttggcggaatttctcttcaaccagtcact
gctagtgtaccacctacaattccacctcctcctgttattcctagtattgcttcaggacca
attgtgcctccaattccacgaccattggcgcctatccctgttcgtcctcctgtattaaga
ccgccggtggcacaaaatggagagactagggggagcggatctgattccgatgaggatgaa
gcaggacccagtcgtggtactactggggcatctgctgaatatgagatttcagaagaaagc
agactggttagagaacggcaggagaaagccatgcaggaacttctgatgaagcgacgtgct
gctgctctggctgtgcctacaaatgacatggctgttcgagctcgtcttcgccggcttggt
gagcctattaccctgtttggagagagggagatggaaagacgggaacgtttgcggaacctt
atggcaaagcttgattcagagggtcagttggagaggctgatgaaggctcatgaggatgaa
gaagcttctggttctgctacacaaggggagggacttgaggaagatattgaatatcccttc
tacactgaagggtcaaaagcgcttcttgatgctcgagtagacattgctaagtattctatt
gtaaaggcagctttgcgtcttcaccgtgcaaggagaaaaagagatgatcctgatgaagac
ttggatgctgaaatagattgggcgttgaagcaggcagggaacctggtacttgaatgcagt
gaaattggagatgacaggcccctttcaggttgctccttttcatgtgatggaaagatgctt
gccacctgttgtctaagtggagttgcaaggacatggagcatgcctgaggtaaagaaggtg
tcaaccttgaagggacatacagaacgagctacagatgtggcattttctcccaccggagac
caattggcaacagcttctgctgacaggactgccaaattgtggaacaaagaaggatctctt
ttgaacacatacaagggccatctggatcgcctcgcacgtattgcattccatccatctgga
aagtacttgggaacagctagctttgacaagacttggagattatggaatgtggagactggt
gaagagttactcctccaagaaggtcacagtaggagtgtgtatggaatctcctttcagaat
gatggttccttggcagcatcatgtggactggatgcgcttattcgggtttgggacttgagg
tctggaagaagcattcttgccctggaaggccatgttaagcctgttcttggtgtcagtttt
tctccaaatggttatcatttggcctcaggtggtgaagataatacttgcagaatatgggac
ttgaggaagagaaaatctctatacataatacctgctcactccaaccttatatctcaagta
aaatttgaacctcaagaagggtactttttggttacaggttcatatgatactacggctaag
gtgtggtcatcaagagattttaagcccatcaagacactgtctgggcatgaagctaaggtg
acgtcactggatgtcgtaggagatggacaatatattgcaaccgtttcacatgatcgcacc
attaagctttggtctggaagaaacagtgagaaagagaagacgatggatgtcgattga
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