KEGG   Coffea arabica (coffee): 113697386
Entry
113697386         CDS       T11342                                 
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
carb  Coffea arabica (coffee)
Pathway
carb03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:carb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    113697386
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:carb03041]
    113697386
Spliceosome [BR:carb03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    113697386
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_WDR3_2nd WD40_Gbeta EIF3I Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_1st Beta-prop_EML Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_C Beta-prop_WDR75_1st ANAPC4_WD40 NBCH_WD40 Beta-prop_Aladin Beta-prop_IFT122_1st WDR90_beta-prop_4th PRP4 Beta-prop_EIPR1 Beta-prop_Vps41 Beta-prop_SCAP Beta-prop_WDR19_1st Beta-prop_RIG_2nd Beta-prop_WDR41 Beta-prop_DCAF4 eIF2A Beta-prop_Nup120_160 WD40_like
Other DBs
NCBI-GeneID: 113697386
NCBI-ProteinID: XP_027072783
UniProt: A0A6P6T396
LinkDB
Position
6e:17228843..17233346
AA seq 579 aa
MEVDEENSVSTSVTEPMTVEADGNQTVVSGVGGISLQPVTASVPPTIPPPPVIPSIASGP
IVPPSIPRPLAPIPVRPSVLRPPVAQNGETRGSGSDSDEDEAGPSRGTTGASAEYEISEE
SRLVRERQEKAMQELLMKRRAAALAVPTNDMAVRARLRRLGEPITLFGEREMERRERLRN
LMAKLDSEGQLERLMKAHEDEEASGSATQGEGLEEDIEYPFYTEGSKALLDARVDIAKYS
IVKAALRLHRARRKRDDPDEDLDAEIDWALKQAGNLVLECSEIGDDRPLSGCSFSCDGKM
LATCCLSGVARTWSMPEVKKVSTLKGHTERATDVAFSPTGDQLATASADRTAKLWNKEGS
LLNTYEGHLDRLARIAFHPSGKYLGTASFDKTWRLWNVETGEELLLQEGHSRSVYGISFQ
NDGSLAASCGLDALVRVWDLRSGRSILALEGHVKPVLGVSFSPNGYHLASGGEDNTCRIW
DLRKRKSLYVIPAHSNLVSQVKFEPQEGYFLVTGSYDTTAKVWSSRDFKPIKTLSGHEAK
VTSLDVVGDGQYIATVSHDRTIKLWSGRNSEKEKTMDVD
NT seq 1740 nt   +upstreamnt  +downstreamnt
atggaagtagacgaggagaatagtgtttcaacttcagttacagagcctatgaccgtagaa
gctgatggtaatcagactgtggtatctggagttggcggaatttctcttcaaccagtcact
gctagtgtaccacctacaattccacctcctcctgttattcctagtattgcttcaggacca
attgtgcctccttcaattccacgaccattggcgcctatccctgttcgtccttctgtatta
agaccgccagtggcacaaaatggagagactagggggagtggatctgattccgatgaggat
gaagcaggacccagtcgtggtactactggggcatctgctgaatatgagatttcagaagaa
agcagactggttagagaacggcaggagaaagccatgcaggaacttctgatgaagcgacgt
gctgctgctctggctgtgcctacaaatgacatggctgttcgagctcgtcttcgccggctt
ggtgagccaattaccctgtttggagagagggagatggaaagacgggaacgtttgcggaac
cttatggcaaagcttgattcagagggtcagttggagaggctgatgaaggctcatgaggat
gaagaagcttctggttctgctacacaaggggagggacttgaggaagatattgaatatccc
ttctacactgaagggtcaaaagcgcttcttgatgctcgagtagacattgctaagtattct
attgtaaaggcagctttgcgtcttcaccgtgcaaggagaaaaagagatgatcctgatgaa
gacttggatgctgaaatagattgggcgttgaagcaggcggggaacctggtacttgaatgc
agtgaaattggagatgacagacccctttcaggttgctccttttcatgtgatggaaagatg
cttgccacctgttgtctaagtggagttgcaaggacatggagcatgcctgaggtaaagaag
gtgtcaaccttgaagggacatacagaacgagctacagatgtggcattttctcccaccgga
gaccaattggcaacagcttctgctgacaggactgccaaattgtggaacaaagaaggatct
cttttgaacacatacgagggccatctggatcgcctcgcgcgtattgcattccatccatct
ggaaagtacttgggaacagctagctttgacaagacttggagattatggaatgtggagact
ggtgaagagttactcctccaagaaggtcacagtaggagtgtgtatggaatctcctttcag
aatgatggttccttggcagcgtcatgtggactggatgcgcttgttcgggtttgggacttg
aggtctggaagaagcattcttgccctggaaggccacgttaagcctgttcttggtgtcagt
ttttctccaaatggttatcatttggcctcaggtggtgaagataatacttgcagaatatgg
gacttgaggaagagaaaatctctatacgtaatacctgctcactccaaccttgtatctcaa
gtaaaatttgaacctcaagaagggtactttttggttacaggttcatatgatactacggct
aaggtgtggtcatcaagagattttaagcccatcaagacactgtctgggcatgaagctaaa
gtgacgtcactggatgtcgtaggagatggacaatatattgcaaccgtttcacatgatcgc
accattaagctttggtctggaagaaacagtgagaaagagaagacgatggatgtcgattga

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