Coffea arabica (coffee): 113697391
Help
Entry
113697391 CDS
T11342
Name
(RefSeq) DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic isoform X2
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
carb Coffea arabica (coffee)
Pathway
carb03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
113697391
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
carb03400
]
113697391
Enzymes [BR:
carb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
113697391
DNA repair and recombination proteins [BR:
carb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
113697391
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
SAP
Exo_endo_phos_2
PMI1_PMIR1-2_C
Motif
Other DBs
NCBI-GeneID:
113697391
NCBI-ProteinID:
XP_027072788
UniProt:
A0A6P6T3A1
LinkDB
All DBs
Position
6e:complement(17278531..17288166)
Genome browser
AA seq
493 aa
AA seq
DB search
MGSKNARHSKSSASSSSPLSSPAAKLGEPESSPKGGISLDEILEIDLDKVEKMTVQQLRV
KLRSVGIPAKGSKNELVSAWKEFVKSKTDGTGYLELDDHESSRKKSNESNSQKAGSLPCR
EHVMTRSSGTKRTKRKVEESLIGHNKVEINRMGSSAQDEQSIEYHEPIAKRSITKKRKVS
SEVISMSSEASNSVHSSGEPWTILTHKKPQKGWVAYNPKIMRPPPLAGDIKHVKLMSWNV
NGLRALLKLESLSALQLARREDFDVLCLQETKLQEKDVEAIRNTLLEDYDHSFWTCSVSK
LGYSGTAIISRMKPLSVRYGLGISDHDTEGRLVTAEFDNFYLLSGYVPNSGDGLKRLSYR
ITEWDPCLGNYLKELEKYKPVILTGDLNCAHQEIDIHDPAGNKRSAGFTVEERQSFETNF
LNKGFVDTFRTQHPGVVGYTYWGYRHGGRKANKGWRLDYFLVSDCIADKVHDSYILPDVA
GSDHCPIGLILKL
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atggggtctaaaaatgcacgtcattctaaatcctcagcatcatcatcctcgcctttatca
tcacctgcagccaaattgggtgaacctgaaagttctcctaagggtggcataagtctagat
gagattcttgaaattgatttggataaagtagagaaaatgacagtccagcaactccgagtt
aaactaaggagtgttggaattccagccaaaggttccaagaatgaacttgtctctgcctgg
aaggagttcgttaaaagcaaaacagatggcacaggttatttggagctagatgatcatgaa
tcttctcgaaagaagtccaatgaaagcaattctcaaaaagctggaagtttgccttgcaga
gaacatgttatgactagaagctctggaactaaacgaactaagagaaaggtagaagaaagc
cttatcggccataacaaagttgaaatcaacagaatgggatcgagtgcacaagatgagcaa
tctattgagtatcatgagccaatagctaagagatcaattacgaaaaagagaaaggtctca
tcagaagtcatcagtatgagttctgaagcatccaattctgttcattcctctggagaacct
tggacaattctcactcataagaagccccaaaaagggtgggttgcatacaatcccaaaatc
atgcggcctcctcctcttgctggtgacattaagcatgttaagctaatgtcctggaatgta
aacggtttgagagctctattaaagttggagagcttgtctgcactgcaactggctagaaga
gaagattttgatgttctgtgcttgcaagagacaaaacttcaggagaaagatgttgaggca
atcaggaatactctccttgaagattatgaccatagcttttggacgtgtagcgtctcgaaa
cttgggtattctgggactgcaatcatttcacggatgaaaccactttctgtcagatatggt
ctgggcatctcagatcacgacactgaaggacgccttgtgacagcagaatttgacaacttc
tatttgttgagtggatacgtgcctaattctggtgatggtctgaagcgactgtcatacaga
ataaccgagtgggatccgtgtcttggtaactacttgaaagaactagaaaaatataagcct
gtcatattgactggtgatttgaattgtgctcatcaagagattgacattcatgatcctgct
ggaaataaaagaagtgctgggttcacagttgaagaaagacaatcatttgagacaaacttc
ttaaataagggctttgtggataccttcaggacgcagcatcctggtgttgttggctatact
tattgggggtatagacatggtggacggaaggctaataaaggatggcggctggattacttc
cttgtctcagactgtatcgcagacaaggttcacgactcgtacattctcccagatgttgca
ggcagtgatcactgtccaattggtctcattcttaagctctag
DBGET
integrated database retrieval system
