Coffea arabica (coffee): 113697522
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Entry
113697522 CDS
T11342
Name
(RefSeq) uncharacterized protein isoform X1
KO
K06100
symplekin
Organism
carb Coffea arabica (coffee)
Pathway
carb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113697522
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
carb03021
]
113697522
03019 Messenger RNA biogenesis [BR:
carb03019
]
113697522
Transcription machinery [BR:
carb03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
113697522
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
113697522
U7-dependent histone pre-mRNA processing factors
113697522
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_EZ
HEAT_2
Motif
Other DBs
NCBI-GeneID:
113697522
NCBI-ProteinID:
XP_027072980
UniProt:
A0A6P6T4B4
LinkDB
All DBs
Position
6e:complement(1091636..1107840)
Genome browser
AA seq
1332 aa
AA seq
DB search
MVGIMATVSRDKISSLINSVKFDADIPSKLEHLRSLSDELSNADSVLLSKFLSPLLDLLS
DRFSPVRKFTAEMIGDIGLKFAESIPEMVPVLIPVLKDDTPAVARQAIRCGMEIFRYVLF
KVALQGMYSNELDTSLESSWSWMLKFRDEICSLAFKPGSDGRRLLALKFMETVVLLYTPD
PNGSSDPPADLDSEASVKEFNISWLRGGHPILNIGDLSIEASQSLGLLLDQLRFPTVKSL
NNLIIIMLINSLSAIASKRPAFYGRILPVLLGLDPSSSSGKGVHHALKSAFLSCLNCTHP
GAVPWRDRLIDTLRELKAVGVAEHAAIELASQNSGSLERKNDSLITQDRKPTSKALDDIC
NDASRKRTGMEESTDLLEDKMSVKRMKSVPVTSDGSTNDLSSDQGRVPSGGSGACKMEED
SGPVQQLVGMFGALVAQGEKAIASLEILISSISADLLAEVVIANMRNFPSNRPQIEGDNE
QLFGRGSCPGMSGSNSEFDNLTLLLTNILSQSSAVPQKDSGMDSLPSAANELELRGTSGN
TDVPGMSYVMEEASVPTTTPASSGGHVPCDTENGGSGTPSDVIDVGNEESEIPGLDLPVP
KDELVITSLGSTELKDASQEQVSSLARSSLELLPSVSTDRSEELSPRATVTDLSCVNSLS
ATSSGLSTQLLLPKISAPVISLSDDQLDNLQKPILLRITDTYKQIATAGGSQVCLSVLAY
LGVKFPLDLEPWKLLQTHILSDYVNHEGHELTLRVLYRLYGEAEEDHDFVSSTTAKSVYE
MFLLTVAETLRDSFPWPDKCLNRLLVEVPYLPDSILKLLEGMCSPGGSNKDNNNPERVRQ
GLSIVWSLILLRPPIRDACLTIALKSAIHPVEEVRDKALRLVVNKLYPQPSMSRQIEAFA
WEVLVSAANANTALESCDADGANAEFKDSDMGKPSNELPVVGTSSKGLSAVTDSFSISES
ISSSLLAEGQRRMALYFAICTKNHSLFRQIFVIYESTSKAVKQAVLHHIPKLVRAIGPSP
ELLQILPDPPTGSMELVMQVLHTLIDGTTPSSELLSTIKKLYDTKVKDVEILILILPFLP
KDEVLAMFPHLVNSPLEKFQLALARVLQGSSSFCPAITPAEALIAIHGIDPERDGIPLKK
VTEACNTCFEQRQIFTQQVLAKVLNQLVEQTPLPLLFMRTVLQAIGAFPSLVDYIMEILS
RLVQKQIWKYPKLWVGFIKCAFLTKPESFGVLLQLPPAHLENVLHRTPALRDPLIAHASQ
PHIKSSLPRSVLVVLGLASDFHNSDLTKPTHSETGELGKSEHTHSSHAQSEETSKSDKEV
VTDKSKESSDAT
NT seq
3999 nt
NT seq
+upstream
nt +downstream
nt
atggtaggaataatggcgacagtttccagagacaaaatctcgagtctcataaactcggtg
aagtttgacgctgatattccttcgaagctggaacacttacgctcgctgagcgacgaactc
tcgaatgccgattctgtcttgctctccaagtttctctcccctcttctggacctcctctcg
gaccgcttcagtcccgttcgtaaattcactgctgagatgattggcgacattggattgaag
tttgcagaatccatacctgaaatggtacctgtattaatacctgtgttgaaggatgatacc
ccagcggttgctcgacaggctattaggtgtggtatggagatttttcgctatgttctattc
aaagttgcgctccagggaatgtattcaaacgagttggatacttctctggaatcatcttgg
tcatggatgctaaagtttcgcgatgagatatgctcgttggcatttaagccaggaagtgat
gggagaaggttgcttgcactgaagtttatggaaacagttgttctactctatacacctgat
cctaatggctcctcagatccacctgctgatctagattcagaagccagtgttaaagaattt
aacatatcatggcttcgagggggtcatcctatactaaatattggagatttgtcaattgaa
gcaagtcagagtttgggtctgctgctcgatcagttgagatttccaacagtaaagtcactg
aacaacttgattatcattatgcttatcaacagtctctctgcaattgcaagtaaaaggcct
gcattttatggacgtattctgccagttttacttggtttggacccttcaagctccagtggc
aaaggggtgcatcatgctttgaagagtgccttcctctcttgcttgaattgtactcatccg
ggtgctgtcccgtggcgtgatcgcttaattgatactctgagagaattaaaagctgtagga
gtggcagaacatgctgctatagaactagcttcacaaaatagtggaagtttagagaggaaa
aatgattctttaataacccaggatcgaaaacctacaagcaaggcccttgatgatatatgc
aatgacgccagcaggaaaagaacaggaatggaagaaagtactgatctacttgaggataaa
atgtctgtaaaacgcatgaaatctgtgcctgtcacctctgatggatcaacaaatgattta
agttctgaccagggcagagttccttctggtggatctggggcttgtaaaatggaagaagac
agtggccctgtccaacaacttgttggtatgtttggtgcattggttgctcaaggagaaaaa
gctattgcatcattagagattctcatctctagtatatcagctgacttgcttgctgaagtt
gtaattgctaacatgcgaaattttccttcaaatcgccctcaaattgaaggagataatgag
cagttgtttggcagagggtcttgtcctggcatgtcaggaagcaattctgagtttgataat
ttaacattgcttctcaccaacattctttcacaatctagtgctgtcccacagaaagatagt
gggatggattctctaccttctgcagcaaatgagcttgagctaagagggacctcgggtaat
actgatgtccctggtatgagctatgtgatggaagaggcttcagtgcctacaactactcca
gcttcttcaggtggacatgtcccatgtgacacagagaatggtggttcagggacgccctct
gatgttattgatgttgggaatgaagagagtgagatacctggtctagatttaccagttccc
aaggatgaattagttattacttctttgggttcaactgaattgaaggatgcaagtcaagaa
caagttagtagtctagctaggtcatcactagaattacttccttcagtgtcaactgatagg
tctgaggaacttagccctagagctacagtcacagacctaagctgtgtcaactccttaagt
gcaacttcttctgggttatcgacacagttgcttttgcccaagatttctgccccggttata
agtcttagtgatgaccagctagataacttacagaagccgattctcttgcgcataactgat
acttacaagcaaatagctaccgctggaggttctcaagtctgcctttctgtacttgcttat
ttaggagttaagtttccattggatttagagccatggaagttactacaaacacatatactg
tctgactatgtaaatcatgaggggcacgagttgactttgcgtgtcctctacaggttatat
ggtgaagcagaagaggaccacgactttgtttcctcaaccactgctaaatctgtatatgag
atgtttcttcttaccgtggcagaaacattaagggattcttttccatggcctgacaaatgt
ctaaatagattgcttgttgaagttccttacctgcccgattccattttgaaattgcttgag
ggcatgtgttcccctggtggcagtaacaaagataacaacaatccggaacgagttcggcaa
ggtcttagtattgtatggagtctgattttgttgaggcctcctattcgagatgcctgccta
acaattgctttgaagagtgcaattcatccggttgaagaagtgcgagataaggccttacgt
ctggtggtgaacaagctttatcctcagccttcaatgtcacggcaaatagaagcttttgcc
tgggaggtgttggtatcagctgcaaatgccaatactgcactggagtcatgtgatgctgat
ggagctaatgctgaatttaaggattctgatatgggaaaaccatcaaatgaacttcctgtt
gttggtacctcttccaaagggttatcagcagtcaccgattcattttcaatatctgaaagt
atatcgtcctccttactagctgaggggcagcgacgcatggctctgtattttgcaatttgt
acaaagaatcactccctctttcgccaaatatttgttatttatgagagtacatccaaggct
gtaaagcaggcagtattacaccacatcccaaagcttgttcgagcaattggcccgtcgcct
gagcttcttcaaatcttacctgatccaccaactggaagcatggagcttgtgatgcaggtt
ttacacacattgatagatgggacaacgccttcctcggaattgttatctaccattaagaag
ttgtatgatactaaagtaaaggatgtagagattctaattctcatactgccatttttgcca
aaagatgaggttttggcaatgtttccacatctcgtgaattccccattggagaagtttcag
cttgcccttgcacgtgtgcttcaggggtcttctagtttctgtccggcaataactccagct
gaagctttgattgcaatccatggaattgatccagaaagagatgggatccctttgaagaag
gttacggaagcgtgtaatacttgttttgagcagcgacagatcttcactcagcaagttctt
gcaaaggtcttgaatcaattggttgagcagactccccttcccctattatttatgcgcacg
gtgctgcaggcaattggtgcttttccatcactggtggactatataatggaaatcctttct
cgccttgtacagaagcagatatggaagtatccaaagctatgggtcggattcattaagtgt
gcttttttgacaaaaccagaatcttttggtgtcttgcttcagcttccaccagcacacctg
gaaaatgtattacatagaacgccagctctaagggatcccttgattgcacatgctagccaa
ccacatattaaatcatcactcccaaggtctgtactagtggtgctaggattagcttccgac
tttcataattcagatttgacaaaaccaacccattctgagacaggagagttgggcaagtcg
gaacatacacactcaagtcatgctcaaagtgaagagactagcaagtctgataaggaggtg
gtgactgacaagtcaaaggaatcatctgatgcaacttga
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