Coffea arabica (coffee): 113697588
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Entry
113697588 CDS
T11342
Name
(RefSeq) rRNA biogenesis protein RRP5
KO
K14792
rRNA biogenesis protein RRP5
Organism
carb Coffea arabica (coffee)
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
carb03009
]
113697588
Ribosome biogenesis [BR:
carb03009
]
Eukaryotic type
90S particles
Other 90S particles
113697588
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
S1_RRP5
S1
OB_RRP5_4th
OB_RRP5
OB_PDCD11
Spt6_S1
Phage_RNApol
Motif
Other DBs
NCBI-GeneID:
113697588
NCBI-ProteinID:
XP_071912468
UniProt:
A0ABM4UYV6
LinkDB
All DBs
Position
6e:63070677..>63093666
Genome browser
AA seq
1488 aa
AA seq
DB search
MAKKSPNKKSSKKPSLRNLQKPSKKPFKSKPPRDGGKGTKTELGDPVLSHQQKQASLALQ
LEDDVPDFPRGGGSSLSKQELEDVRAEVDAEFEAEERVSKKKNKRAKRFEWRSQSAEDDM
GSLFGDAFTGKLPRFANKITLKNISPGMKLWGVISEVNQKDVVVSLPGGLRGLVRASEAF
DPLPNDGVKGDMESNFLSSIYHVGQLVSCIVQQVDDEKKETGKRRIWLSLRLSLLHKGLT
MDIIQEGMVLSAYIKSIEDHGYTLNFGFGSFTGFMPESHQSERKDTEVKVGQLIQGVVKS
IDKTRKLLYMSSDSDMVSKCVTKDLKGISIDLLVPGMMVDARVRSSLENGIMLSFLTYFT
GTVDIFNLSETFPSANWKDHYTQGKKVNARILFIDPTTRAVGLTLNPHLVHNRAPPTLVQ
TGDIFDQSKIIRIDRGLGLLLEIPSSPVATPAYVSVSDVADKEIKKLEKNFKEGSLVRVR
VLGLRHLEGLATGILKASAFEGTVFTHSDVKPGMVVKAKVIAVDSFGAIVQLGSGVKALC
PLRHMSEFEITKPRKKFQVGAELVFRVLGCKSKRITVTHKKTLVKSKLEILSSYADAIEG
LITHGWITNIENHGCFVRFYNGVQGFAPRSELGLDLGCVINSMYHVEQVVKCRVTSSIPA
SRRINLSFTAKKTRIAEDDMMNLGSLVSGVVEQVTPHAVVVCVNSKSHIKGTISPEHLSD
HLGLGALLKSVLKPGHQFDKLLVLDIEGSNLILTAKYSLVNSARDLPLDIKQVCPHSIVH
GYVCNLIEAGCFVRFVGRLTGFAPKHKAVDDRRSDVSEVFSIGQSVRCNVVDVNSETNRI
TLALKQSLCSSTDASFIREYFLLEDKISKLQLLGSESSELNWVDEFQVGSIIEGKVNEKK
EFGVVISFEKYKDIFGFISQYQLDGIAVDFGTTVQAAVLDISKSERLLDLSLKPQFVERS
KREGSSVHSVKKKRGRETHKGLDLKQTVHAQVEIVKEDYLVLSIPTHNFALGYASLADYN
TQMLPRKQFVNGQSVVATVADLPSPSTGGRLLLLLKSMNEVMDSSTSKRAKRKANIDVGS
VVQAEITEIEPLELRVKFGSGFHGRVHITEATDDNLAEDPFNSLRVGQTVNAMIVSKCNR
NRSYQWELSLKHSLLAGAGEVEDGLLVEDFDYPIGGRVSGFVYKVDKEWAWVTVSRDVRA
QLYILDSASEPTELEKFEKHFYIGMALSGYVIKADKEKKLLRIVLHPILTHIDSACSLSD
GCSTSPLNGNKACHISVGGFVGGRISKILPGVGGVLVQIDQHLYGKVHFTELTKAWVSDP
LAGYHEGQFVKCKVLEISHSFKGTVHVDLSLRLTSDDMDHGKFADLYPSMNSISPRVENI
EDLKPDIVVKGYVKNVSSRGCFIMISRTVDAKILLSNLSDGFVENPEKEFPVGKLVIGRV
ISVEPLSKRVEVTLKTSNSVSVSKLDVNSLNKLTVGEFSNAYLPRISA
NT seq
4465 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagaaatctccgaacaagaaatcatctaagaagccgtctttgagaaatcttcag
aagccatcaaagaaacccttcaaatcaaaaccacctagagacggcggcaaaggcaccaaa
accgaattgggcgaccccgttttgtctcatcaacaaaagcaagcttcacttgccctgcaa
ctcgaagatgacgtccccgacttccccagaggtggaggtagttcactgagtaaacaggag
ctggaggacgtgagagcagaggtagatgcagagtttgaggcagaggagagagtttcgaag
aagaagaacaaaagggcaaagcggttcgaatggagaagccaatcggcagaagatgatatg
ggctccctttttggtgatgcattcaccggaaagttgcctaggtttgcaaataagatcact
ttgaagaatatttctcctggcatgaagctttggggcgtaatttcagaggtaaatcagaaa
gatgttgtggttagtcttccagggggtttgcgtgggttagttcgtgcgagtgaagcattt
gatcctcttccaaatgatggagtaaaaggggatatggaaagtaattttctttcaagcata
tatcatgttgggcagcttgtctcgtgcattgtgcaacaagtggatgatgagaagaaagaa
actgggaaaagaagaatttggctttcccttcgtctttctttactgcacaaaggcttgaca
atggatattattcaagaaggaatggttcttagtgcatacataaaaagcattgaagaccat
ggttatacacttaattttggatttggttcctttactggattcatgcccgaaagccaccaa
tctgaaagaaaggacacagaagtgaaagttgggcagcttattcaaggggtcgttaaaagc
attgacaaaactcgaaaattgctttacatgagctctgattctgatatggtgtcaaaatgt
gtgaccaaggaccttaaaggtatttcaattgatcttctcgttccaggcatgatggttgat
gctcgtgttcggtcatcccttgaaaatggcatcatgttatcattcctcacatacttcacg
ggaactgtagatatatttaacttaagtgagacttttccctctgctaactggaaagatcat
tacacccaaggcaagaaggtcaacgctcggatattatttatagatcctacaactagagct
gttggtttgactctgaatcctcacctagttcataatagagctccacctacactggtccaa
actggtgatatctttgatcaatcgaaaataatcaggattgacaggggtttgggccttttg
ctcgaaatcccctcttctccagtagcaacccctgcgtatgttagtgtgtctgatgttgct
gacaaggaaatcaagaagctagagaaaaatttcaaagagggaagtcttgtgcgagttaga
gtgcttggacttaggcacttggaagggcttgctactgggattctgaaggctagtgctttt
gaagggacagtctttactcattcagatgtcaagcctggaatggttgttaaggctaaagta
attgcagttgacagctttggtgccattgtgcaacttggaagcggtgtgaaagcactttgt
cctcttcgacacatgtctgagtttgagataacaaaacctagaaaaaagttccaggttgga
gctgaactagttttccgtgttcttggttgcaagtccaagaggatcactgttacacacaag
aaaactctagtgaagtcaaagcttgaaattcttagttcatatgccgatgccattgaagga
ctaataacccatggatggataacaaatattgagaaccatggatgctttgttcgcttttac
aatggtgtacaaggatttgcaccaagatctgaacttggtttggatctgggatgtgtcata
aattcaatgtatcatgtcgagcaggttgtgaaatgtagagtgaccagctctatacctgcc
tcaaggagaatcaaccttagtttcactgcaaaaaaaacaaggattgctgaagatgatatg
atgaatcttggaagccttgtatctggagttgttgagcaagtaactcctcatgcagttgtg
gtttgtgttaactccaaaagtcacattaagggtaccatctctcctgaacatttatctgac
cacctagggcttggtgcattgctgaaatcagttctgaaacctggacaccagtttgacaaa
ctcttggttcttgatattgaaggcagcaatctcatactcactgctaagtattcgcttgtg
aattctgcccgagaccttcctttggatatcaagcaagtttgccctcattcaatagtccat
ggatatgtgtgtaatctaatcgaagctggttgctttgttcgctttgttgggcgtttgact
ggttttgccccaaaacataaggcagtagatgacaggagatctgatgtttctgaagtcttt
agcattggtcaatctgttcgctgtaacgtagttgatgttaatagtgaaacaaatagaata
acacttgcattgaagcagtcgttgtgttcctcgacagatgcatcctttattcgagagtac
tttcttttggaagacaagatatctaaactgcaattgctgggctctgagagcagtgaatta
aattgggttgacgaattccaagttggaagtataattgagggaaaagttaatgaaaaaaag
gagtttggtgtggttatcagctttgagaagtacaaagacatttttggcttcatttcccag
taccagttggatggaattgcagtggattttggtacaactgttcaggctgcagttcttgat
atatcaaagagtgaacggctgttggatttgtcattgaaaccacagtttgttgaaaggtca
aaacgtgagggctccagtgtgcactctgttaagaagaaacgtggaagggaaacacataaa
gggctggatctgaaacaaactgttcatgcgcaagttgagattgtgaaagaggattacttg
gttctgtcaatacctacacataattttgctttgggttatgcctcgcttgctgattacaat
actcaaatgcttcctcggaaacagtttgttaatgggcagagtgtcgtagccactgttgct
gatcttccaagtccatcaacaggtggaaggttgctattactgcttaaatctatgaatgag
gttatggattcatccacttcgaagcgcgcaaaaaggaaggccaacattgatgttggttct
gttgttcaggcagagattactgaaatcgagcctcttgaacttcgagtaaaatttggttct
ggttttcatgggagggtacacattaccgaggctacagatgataatcttgctgaagatccc
ttcaacagcctcagggttggccagacagtcaacgcaatgattgtttcgaagtgtaatcgt
aacagaagctatcaatgggaattgtccctaaaacactcgttgcttgcaggtgctggtgaa
gtagaagatgggcttcttgtagaagattttgattaccctattggtggaagagtttctggg
tttgtttataaagtggacaaggaatgggcctgggtgactgtatctcgagatgtcagggca
caattgtatattttggacagtgcatctgagcctactgaacttgaaaagttcgagaagcac
ttttacataggcatggctctttcaggatatgtcataaaagcagataaggagaaaaaattg
ttacggattgtcctgcacccaattctcactcatatagacagcgcttgtagcctgagtgac
ggttgttcaactagtcctttaaatgggaataaagcatgccatattagtgtaggtggtttt
gtgggtggcagaatatctaaaatccttcctggtgttggcggtgtacttgttcaaattgat
cagcatctctatggtaaggttcattttactgaattgaccaaggcatgggtctcagatcca
cttgctggatatcatgagggtcaatttgtgaaatgcaaagtccttgaaatttcccattct
ttcaagggcactgtacatgttgatctgtcactacggctcacttcagatgatatggatcat
ggaaagtttgctgatctctaccctagcatgaactccatcagtccacgtgtggagaatatt
gaagatcttaaaccagacattgttgtaaagggatatgttaagaacgttagttcaagagga
tgttttattatgatttctcggacggttgacgcaaaaatcctcttgtcaaacttgtcggac
ggctttgttgagaatccagagaaagaatttccagttgggaaacttgtcattggcagggtg
atatctgtcgaacctttgtccaagcgagttgaagttactcttaagacatccaacagtgtc
agtgtctcaaagttggacgtaaattctttgaataagctcactgttggagaattttctaat
gcttacttgccccgtatatcagcga
DBGET
integrated database retrieval system
