Coffea arabica (coffee): 113698760
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Entry
113698760 CDS
T11342
Name
(RefSeq) protein transport protein SEC13 homolog B-like
KO
K14004
protein transport protein SEC13
Organism
carb Coffea arabica (coffee)
Pathway
carb03013
Nucleocytoplasmic transport
carb04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
113698760
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
113698760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113698760
04131 Membrane trafficking [BR:
carb04131
]
113698760
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
113698760
Membrane trafficking [BR:
carb04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
113698760
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
113698760
Autophagy
Other autophagy associated proteins
SEACAT/GATOR2 complex
113698760
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
Beta-prop_THOC3
Beta-prop_IFT122_1st
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40_WDHD1_1st
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_WDR3_2nd
Beta-prop_Vps41
Beta-prop_RIG_2nd
ANAPC4_WD40
WDR55
WD40_Gbeta
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR19_1st
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR41
NBCH_WD40
Beta-prop_IFT140_1st
WD40_RFWD3
Beta-prop_SCAP
Beta-prop_NOL10_N
Beta-prop_NUP159_NUP214
WD40_2
Motif
Other DBs
NCBI-GeneID:
113698760
NCBI-ProteinID:
XP_027074496
UniProt:
A0A6P6T9Q0
LinkDB
All DBs
Position
7c:1392076..1394371
Genome browser
AA seq
302 aa
AA seq
DB search
MPAQKIETGHNDTVHDVSMDYYGKRVATASSDSTIKVIGVSNNNTSQHLATLSGHQGPVW
QVAWAHPKFGSLLASCSYDGKVIIWKEGNQNEWSQAHVFSDHKSSVNSIAWAPHELGLCL
ACGSSDGNISVYTARSDGTWDTTRIDQAHPVGVTSVSWAPSTAPGALVGTSILDPVQKLA
SGGCDNTVKVWKLYNGIWKMDCFPALQMHADWVRDVAWAPNLGLPKSTIASASQDGTVVI
WTVAKEGDQWEGKVLRDFKTPVWRVSWSLTGNLLAVAAGDNNVSMWKEAVDGEWQQVTTA
DQ
NT seq
909 nt
NT seq
+upstream
nt +downstream
nt
atgccggcacagaagattgaaacgggtcataatgacacggttcatgatgtttctatggac
tactatggaaaacgagttgcaacagcttcatctgactccaccataaaggttattggtgtg
agtaacaataatacttcccagcaccttgccactttgagtggtcatcaaggtcctgtttgg
caggttgcttgggcacaccctaaatttggctcacttcttgcatcttgttcctatgacggt
aaggttatcatctggaaggaaggtaatcaaaatgagtggtcacaggctcacgtgttcagt
gaccataagtcatcagtcaattctattgcatgggcgccacatgaacttgggctctgcttg
gcttgcggatcctctgatggaaatatttcagtgtacacagctaggtcggatggtacctgg
gacaccacaagaatagatcaagctcatcccgttggagtgacctcggtttcatgggctcct
tcaacagctcctggtgctttagttggaacaagtatccttgaccctgttcagaagctagca
tctggtggttgtgacaatactgtaaaggtctggaaactgtataatggcatttggaagatg
gattgcttccccgctcttcagatgcatgctgattgggtgagagatgttgcttgggcgccc
aatttggggcttccaaagtccaccatcgccagtgcttcacaagatggtactgttgtcata
tggaccgtagctaaagaaggtgatcaatgggaaggtaaggttttgagggactttaagacc
ccagtctggagggtctcatggtctcttactggaaatttgctggctgtggctgctggagac
aacaatgtctccatgtggaaggaagctgttgatggggagtggcagcaagtcaccactgct
gaccaatag
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integrated database retrieval system
