Coffea arabica (coffee): 113699257
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Entry
113699257 CDS
T11342
Name
(RefSeq) ATP-dependent RNA helicase-like protein DB10
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
carb Coffea arabica (coffee)
Pathway
carb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113699257
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
carb03041
]
113699257
03009 Ribosome biogenesis [BR:
carb03009
]
113699257
Enzymes [BR:
carb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113699257
Spliceosome [BR:
carb03041
]
Complex A
U1 snRNP components
U1 related factors
113699257
Complex B
113699257
Ribosome biogenesis [BR:
carb03009
]
Eukaryotic type
Pre-60S particles
Helicases
113699257
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
113699257
NCBI-ProteinID:
XP_027075289
UniProt:
A0A6P6TA66
LinkDB
All DBs
Position
7c:complement(902481..908294)
Genome browser
AA seq
779 aa
AA seq
DB search
MAATATVSAGIRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVSSSHVGSAP
LHKPLSSSVHVQKSSQGQRRESSPIDDDDRYSRGGNGASMKVFSGVGSSQDLHSGPYHPR
DVANVTVGTGGVKGYSSSSAGTGLSGEAYRRRHEISVTGDNVPPPLTLFDSTGFPSEILR
EVYNAGFSAPTPIQAQSWPIALQGRDIVAIAKTGSGKTLGYLIPGFIHLKRRHNNPQLGP
TVLVLSPTRELATQIQDEAIKFGKSSRISCTCLYGGAPKGPQLKEIDRGVDVVVATPGRL
NDILEMRRVSLDQVSYLVLDEADRMLDMGFEPQIRKIVKEVPTRRQTLMYTATWPKEVRK
IAADLLVNPVQVNIGNVDELVANKSITQHVELLSSMEKHRRLEQILRSQEPGSKIIIFCS
TKKMCDQLARNLTRQFGAAAIHGDKSQSERDFVLSQFRNGRSPILVATDVAARGLDIKDI
RVVINYDFPTGIEDYVHRIGRTGRAGATGVAYTFFGDQDAKYASDLVKVLEGANQRVPVE
IRDMALRGGGMGRSRRWGSGPGGRDGGRGGRYDSDYSSRDGRGSWANSSERGGGHGYDRD
SRDSERYGRNSRDAEASGSYHYGSFHEKMTQKHSRSRSRSRSRSPIRGSGWGDNRSKGQS
RSRSADRFDQAPPVRSFHEAMMQRARSPPKFGDLDFPSFNGSKSKEDSDNHWGSLQSPSH
GSERENVGGSCEQQWGHSPVKRQDNQSNLHIGEEEEEGMIQAEEALAPHDEDGLFPRNK
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atggcggctactgctactgtctctgcaggcatacggtatgcaccagaggaccctaccctc
cccaaaccttggagaggcctagttgatggtaagactggatatctgtacttttggaatccg
gagaccaatgttacgcaatatgagaggcctgtttcctcttcgcatgtgggatctgctccg
ctgcataaaccacttagttcatctgttcatgttcaaaaatcttctcaaggacaacgccgt
gagagtagtcccatagatgatgatgatagatacagcagaggtggtaatggtgcttcaatg
aaggttttctctggagttggaagttctcaggatctgcatagtggaccatatcatcctcgt
gatgttgcaaatgtaacagtgggcactggtggtgtgaagggatactcatcatcaagtgca
ggaactggcttatctggagaggcctatcgtcgtcggcatgaaataagtgtaacaggagac
aatgtgcccccacctttgacattatttgattccactggttttccatctgagattctgaga
gaggtatacaatgctgggttctctgcccctactccaatacaggcacaatcatggccaatt
gctcttcaaggtcgcgatattgtagcaattgccaagacaggctctgggaaaacgttgggt
tatctgattcctggttttattcatctaaagcgcagacacaacaatcctcagttgggtcct
actgttttggtgctgtcaccaacaagggaattggcgactcaaatacaagatgaagctata
aaatttggaaaatcatcaaggatatcttgcacgtgcttgtatggaggtgctccgaaagga
cctcaactaaaggagatagataggggtgtggatgtcgttgtggctactcctggccgattg
aatgatattctggagatgagaagagttagcctggatcaagtctcatatttggtactagat
gaggctgaccgcatgttggacatgggatttgagcctcagataaggaaaattgtgaaggag
gtgccaactcgaaggcagaccttgatgtacactgccacttggcctaaggaggttcggaaa
attgctgctgatctccttgttaatccagttcaggtgaacattgggaatgttgatgagctc
gtagctaacaagtctatcacccagcatgttgaactcttatcatcaatggagaaacaccga
cggttggagcagatattgcgatctcaagaaccgggatcaaagataatcattttttgttca
actaagaagatgtgtgatcaacttgcacgcaacctaacccgccagtttggagctgctgct
attcatggggacaaatcccagagcgagagggattttgtcttgagccagtttcggaatggt
agatctccaatccttgtagccactgatgttgctgctcgtggcctagatattaaagatatc
agagtggtgataaactatgacttccccactggaattgaggactatgttcatagaattgga
aggactggaagggcaggtgccactggggtggcgtacacattttttggtgaccaggatgct
aagtatgcttctgatcttgtcaaagttttggaaggtgccaaccaacgtgttcctgtcgaa
atccgtgatatggctttacgcggtggtggaatgggaaggtctaggcgttggggatctgga
cctggtggacgtgatggtggtcgaggtggccgttatgattctgattacagtagcagagac
ggacgaggcagttgggcaaactcatctgaaagaggaggtggacatggttatgaccgggac
tcccgtgacagtgagaggtatggtcgcaattcccgtgatgctgaagcctcaggaagctac
cattacggaagctttcatgaaaaaatgactcagaagcatagtcgaagtagaagtcgtagt
cggagtagaagccccatccgtggatctggttggggtgacaaccgaagcaagggccaaagt
cgtagccgcagtgctgacaggtttgatcaggctccaccagtacgtagttttcatgaagct
atgatgcaacgggcccgttcacctccaaaatttggtgatcttgatttcccgtctttcaat
ggaagtaaatcaaaagaagattcagacaatcattgggggagcttgcagtctccatcccat
ggttctgagagggagaacgttggaggttcatgtgagcagcaatgggggcattcaccagtt
aagcggcaggataatcaatcaaatttgcatattggggaggaagaagaggaaggaatgatt
caagctgaagaagctttggcgcctcacgatgaagacgggctgtttcccaggaacaaataa
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