Coffea arabica (coffee): 113699377
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Entry
113699377 CDS
T11342
Name
(RefSeq) pre-mRNA splicing factor SR-like 1 isoform X1
KO
K12850
pre-mRNA-splicing factor 38B
Organism
carb Coffea arabica (coffee)
Pathway
carb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113699377
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
carb03041
]
113699377
Spliceosome [BR:
carb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
113699377
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Motif
Pfam:
PRP38
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
113699377
NCBI-ProteinID:
XP_027075517
UniProt:
A0A6P6TC96
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Position
7c:complement(9284187..9289499)
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AA seq
406 aa
AA seq
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MAEIQTSGRPIDQLLEKVLCMNILSSDYFRDLLRLKTYHEVIDEIYNQVDHVEPWMTGNC
RGPSTAFCLLYKFFTMKLTVKQMHGLLKHPDSPYIRAVGFLYLRYYADPKTLWNWYEPFI
KDDEEFAPGSNGRMTTMGVYIRDLLLGQYYFDTLFPRIPVPVMRSVVSNLEKLKLPTKHC
GTTGESTRGSDETARRPPSVKAALSVSFGQRAPHRASTRDSSPVRRTIPPPSYDRDDGSR
RSPSGRRSQSRELSDRDYIDRDRGRDRDRDRDRERYRDRERDRDSDRDRDRRYDYDRRSR
ESGRDYERRSRDGSRHYSEGSSRRSRSRSRSRSRSQSMYEHSMHGDHRSSPRDGNKEKTT
ASSNLAKLKDIYGDLGNQKEDTGKDRGPNRDSGTEEVIRLGGSTWR
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atggcggagatacagacctctggcaggccaattgatcaattgttggagaaagtcctttgc
atgaatattctttcttctgattacttcagagaccttttgagattaaaaacttaccatgaa
gtgatagatgagatctacaatcaagttgatcatgtggagccatggatgactggcaattgt
cgtggtccttctacagcattctgccttctatataaattttttactatgaagctcactgtc
aagcaaatgcacggtctcttgaagcacccagactctccctatatcagagctgttgggttt
ctttacctaagatattatgctgatccaaagactctatggaactggtatgaaccatttatc
aaggatgatgaggaatttgctcctggatccaatggtcgcatgactacaatgggtgtttat
attagggacttgcttcttggacagtactattttgatactctttttcctcgcatccctgtt
cctgtgatgcgctctgttgtatccaatctcgaaaaactgaagcttccaaccaagcattgt
ggtaccactggggaatcaacacgtggatctgatgaaactgcccgtcggccaccatctgtt
aaggctgctctctccgtctcttttggtcagcgtgctccacatcgtgcatcaactagagat
tcatctcctgtccgacgcaccataccaccaccatcatatgatagagacgatggttcaaga
cgttcccccagtggtcgccgaagccaaagccgtgagttgtctgaccgggattatatagat
agggatcgtggcagggaccgggaccgggacagggacagggaacgatatcgggatagggag
cgggacagggacagtgacagagatagagacagaaggtatgactatgatcgacggtcccgg
gaaagtggaagggattatgagaggaggagccgtgatggcagccgacattatagtgaaggt
agttcccgtaggagcaggagcaggagcagaagcaggagcagaagtcaaagcatgtacgag
catagtatgcatggtgatcatcgtagttcacctcgagatgggaacaaggagaagactact
gcatccagcaatctggccaaacttaaagatatatatggcgatttgggcaatcaaaaggag
gacacgggcaaggacagggggcctaatagggatagtggcactgaggaggttattagactt
ggtggttctacttggaggtag
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