Coffea arabica (coffee): 113700208
Help
Entry
113700208 CDS
T11342
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
carb Coffea arabica (coffee)
Pathway
carb00040
Pentose and glucuronate interconversions
carb01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
113700208
Enzymes [BR:
carb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
113700208
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
113700208
NCBI-ProteinID:
XP_027076526
UniProt:
A0A6P6TFZ5
LinkDB
All DBs
Position
7c
Genome browser
AA seq
416 aa
AA seq
DB search
MGSSELTNCFFLLFFGLASVVPALTTANVFVRDEGALHRFHDLMPLNATIRRELRGRRYR
GPCMATNVIDKCWRCDPNWANNRQRLADCAQGFGRAAKGGQGGPIYVVTDPSDDNVAEPR
PGTLRHAVIQKGPLWIIFARSMTITLSQELIMQSHKTIDGRGVNVHIAYGAGFTIQFVRN
IIIHNVHIHDVKTTSGGMIRDSVDHVGLRTANEGDGISIFGARDVWLDHLSMSKCSDGLI
DAVQASTAITISNCHFTDHDKVLLFGASDVTEVDKNMQVTVAFNHFGKRLVQRMPRCRSG
FFHLVNNDYTHWEMYAIGGSHDATIISQGNRFIAPPLSQFFKEVTHRDAPVALWSKWTWV
SDGDVFLNGARFVPSGNPDGARQFAALELIKAAPGTEVFTLTRFSGFLSCVIGRAC
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atggggtcatctgaactcaccaattgcttttttctcctcttcttcggtttggcttcagtt
gttcccgcactgactacagcaaatgtatttgtacgtgatgaaggggctttacaccggttt
catgacttgatgccattgaatgccaccatcagaagagagctaaggggaaggagatacaga
gggccatgcatggccaccaacgtgattgacaaatgctggagatgcgaccccaactgggct
aataacaggcagcggctggcagattgtgcccaaggtttcggccgcgctgccaagggtggc
caaggtggcccaatctacgtggttactgatccctcggacgataatgtggctgagccaaga
ccaggcaccctcaggcatgctgtgatccagaaagggccactgtggatcatatttgctcga
agcatgacaattaccctttctcaggaattgatcatgcagagtcacaaaacaatcgatggg
cgcggtgtcaatgtccacattgcttatggcgctggtttcaccatccaatttgtgcggaat
atcatcattcataatgttcatatccacgatgtcaaaacaacatccgggggcatgatcagg
gactccgtggatcatgttggcttaaggactgctaatgaaggcgatggaattagcatcttt
ggagctagggatgtttggcttgatcatctctccatgtctaaatgttctgatggcctcatc
gacgccgtccaggcttcgactgcaatcaccatctcgaattgccactttactgatcacgac
aaggtgttgctattcggtgccagcgacgtcaccgaggtggataagaacatgcaggtcaca
gttgcattcaaccattttggcaagagactggtacagagaatgccaaggtgccgatcggga
ttcttccatctagttaacaatgactacacccattgggaaatgtatgcaattggtggaagc
catgacgctacaattataagccagggtaaccgtttcatcgcccctccgctttcacaattt
ttcaaagaggtaacgcatagggatgctccagttgccttgtggagtaaatggacatgggtg
tcagatggagatgttttcttgaatggagctagatttgtaccctctggaaatccggacgga
gctaggcaattcgccgctctcgaattgatcaaagcagctccggggacggaagttttcacg
ttgacaagattctcaggttttcttagttgcgtgattggacgggcctgctag
DBGET
integrated database retrieval system
