KEGG   Coffea arabica (coffee): 113700220
Entry
113700220         CDS       T11342                                 
Name
(RefSeq) uncharacterized protein isoform X1
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
carb  Coffea arabica (coffee)
Pathway
carb03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:carb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    113700220
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:carb03019]
    113700220
   03041 Spliceosome [BR:carb03041]
    113700220
Messenger RNA biogenesis [BR:carb03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     113700220
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     113700220
Spliceosome [BR:carb03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    113700220
SSDB
Motif
Pfam: RRM_1 RRM_7 Mit_ribos_Mrp51 RRM_MARF1 RRM_RdRP1_2
Other DBs
NCBI-GeneID: 113700220
NCBI-ProteinID: XP_071913203
UniProt: A0ABM4V0Y3
LinkDB
Position
7c:complement(2490823..2494814)
AA seq 337 aa
MYLCSLDQRRKHSSPHYKVFRPSATVNLLKPSQVHFRKGRDNGSRGSRCQREGVDMAFVN
RISNVLKLRVSRHMNLELSASNSSLYQTIRSMSSSKLFVGGLSYNTDETSLKEAFSQHGE
VVEARIIMDRDHGNSRGFGFVTYASSEEASAAIQAFDGQDLHGRRIRVNYANDRPRAPRF
SGGYGGGGSGFNYGRGNGGYGGPGGYASGSYGGGGPRGGYDSGNYGNSNQYASGDGRMDG
FSGSNYGSRVGDGNAGNFGASGDSHYLSSDSSNQGGFANSGFDGNTSPYGQAQEQLSGNQ
GGADALDEDFGQDTLNANYKDNDDDEDDSNDYVNTRG
NT seq 1014 nt   +upstreamnt  +downstreamnt
atgtacctatgtagtttagatcaacggcgtaaacattcctccccccattataaagtattt
cggccctctgccactgtaaatctcctaaaaccctcgcaggtccatttccggaagggaagg
gacaacggaagcagaggcagccgctgtcagagagaaggtgtagacatggcttttgtcaat
agaattagcaatgtgcttaaactgagagtgagcaggcatatgaatttggaattatctgct
tccaactcgtcactttaccagactataagaagcatgtcatcttcaaagctctttgttgga
gggctttcttacaacactgatgagacgagtttgaaggaagccttctctcagcatggcgaa
gttgttgaagctagaattatcatggatcgtgaccatggaaactcaagaggttttggcttt
gtaacttatgcctctagtgaggaggcttcagcagctattcaggcatttgatggccaggat
cttcatggccgacggataagggtgaattatgcaaatgacaggcctcgggctccaagattt
agtggtggctatggtggcggcggcagcggctttaactatggtcgtggaaatggtggttat
ggaggccctggaggatatgcaagtggcagttatggaggtggtggcccaagaggtggatat
gatagtggaaactatggaaatagcaatcaatatgctagtggggatggcaggatggatggg
ttcagtggcagcaattacggaagtagagttggtgatgggaacgctggcaattttggtgct
agtggagatagccactacttgagcagtgattcatctaatcaaggtggatttgcaaactct
ggttttgatggaaatacctcgccatatggacaagctcaggaacagttgagtggcaatcaa
gggggagcagatgctcttgacgaagattttggccaagacacactgaacgcaaactacaag
gataatgatgatgatgaagatgattccaacgattacgtcaacacaaggggctga

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