Coffea arabica (coffee): 113701112
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Entry
113701112 CDS
T11342
Name
(RefSeq) vacuolar protein sorting-associated protein 35A-like isoform X1
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
carb Coffea arabica (coffee)
Pathway
carb04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
113701112
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
carb04131
]
113701112
Membrane trafficking [BR:
carb04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
113701112
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
Motif
Other DBs
NCBI-GeneID:
113701112
NCBI-ProteinID:
XP_027077422
UniProt:
A0A6P6T5K6
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Position
7c:complement(7786937..7795664)
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AA seq
790 aa
AA seq
DB search
MHHNGVEDEEKWLAAGITGLQQNAFFMHRALDSNNLKDALKYSAQMLSELRTSRLSPQKY
YELYMRAFDELRKLEIFFKEETKRGCSIVELYELVQHAGNILPRLYLLCTVGSVYIKSKE
APAKDILKDLVEMCRGIQHPLRGLFLRSYLSQVSRDKLPDLGSEYEGDAETVSDAVEFVL
QNFTEMNKLWVRMQHQGPAREKEKREKERSELRDLVGKNLHVLSQIEGVDLDMYRETVLT
RVLEQVVNCKDEIAQCYLMDCIIQVFPDEYHLQTLETLLGAFPQLQPSVDIKTVLSRLMD
RLSNYAASSAEVLPEFFQVEAFVKLSNAIGKVIEAQDDMPVIGVVTLYSSLLTFTLQVHP
DRLDFVDQILGACVTKLSGKGKLEDSKSRKQVVALLSAPLQKYNDIDIALKLSNYPHVME
YLDNGTKKEMASVIIQSIMKNKTLISNSEKVEALFELIKGLIKDLEGNLQSELDEEDFHE
EQNSVARLIQMLHNDDPEEMLKIICTVKKHILAGGPKRLPFTVPPLIFNALKLIRRLQNR
DENVAEEDTPATPKKIFQILNQIIEALSSVPVPEVAMRLYLQCAEAADDSDLEPVAYEFF
TQAYLLYEEEISDSKAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAKLLKKPDQC
RAVYACSHLFWVDDQDSIKDGERVLLCLKRALRIANAAQQMANATRGSGGSVTLFIEILN
KYLYFFEKGVTQITVASVQSLIELITNEMQGENATPDPTADAFFASTLRFIQFQKDKGGA
VGEKYEAIKV
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgcatcataacggagtcgaagacgaagaaaaatggttggccgccggcatcaccggcctg
cagcaaaacgccttttttatgcatcgagctctggattcgaataatttgaaggatgcgctc
aagtactcagctcagatgctttcggaacttcggacttcgaggctttctcctcagaaatat
tacgaattatatatgcgagcatttgatgaattaaggaagctagagatttttttcaaggag
gagaccaagcgtggttgctcaatagttgaattgtatgagctggtgcagcatgctggcaac
atattgcccaggctgtatctcctttgtactgttgggtctgtgtacataaaatccaaggaa
gctcccgcaaaggatattcttaaagatcttgtggagatgtgccgtggcatacaacatcct
ttacgtgggctctttctaaggagttacctttctcaagtcagtagggataaattacctgat
ctgggttctgagtatgaaggggatgctgagacagtctcggatgctgtggagtttgtactc
caaaatttcacagagatgaataaactttgggttcgaatgcaacatcagggacctgctcgg
gagaaggagaaacgtgaaaaagagaggagcgagcttcgtgatcttgtggggaagaaccta
catgttctcagccagattgagggtgttgaccttgatatgtaccgagagactgttcttacc
agggtcttggagcaggtagtcaactgcaaggatgagattgcacaatgctacttgatggat
tgcataatccaagtattccctgatgaatatcacttgcagacacttgaaactctactgggt
gctttcccacagcttcagccttctgttgacatcaagacagtgctttctcgactaatggat
aggctgtcaaactatgctgcttcaagtgcagaagttttacctgagtttttccaagtagaa
gcttttgtgaaactgagtaatgccattggcaaggtgattgaggcgcaagatgacatgcca
gttattggagttgtaactttgtattcgtctcttttgacatttacgcttcaagtgcaccca
gatcgtcttgattttgtggatcaaatattgggcgcttgtgtgacgaaactttctgggaaa
ggaaagcttgaagatagcaaatcaagaaaacaagttgttgcacttctaagtgctccgctt
cagaaatacaatgatatagatatcgcattgaagctttcaaattatccccatgtgatggag
tacttagacaatggaacaaagaaggagatggccagtgtcataattcaaagtatcatgaaa
aataagacattaatttctaactctgagaaggtcgaggccctgtttgagttaataaaggga
ctcattaaagatttagaagggaatcttcaatctgagcttgatgaggaagactttcatgag
gagcagaattccgttgcacgtcttattcaaatgcttcacaatgatgatccagaagaaatg
cttaagattatatgcactgtgaagaagcatattttggctgggggacctaagaggcttccc
tttacagtccctcccctaatctttaatgctctcaagttgatcagacgactgcaaaatcgg
gatgaaaatgtcgctgaagaagacacacctgctacacctaagaaaatctttcaaatactg
aaccagataattgaagctctgtccagtgttcctgtacctgaagttgctatgcgactttac
ttgcagtgtgctgaggctgctgatgactctgatcttgaacctgttgcctatgagttcttc
acccaagcttatctactatatgaagaagaaatttcggattctaaggctcaagtaactgca
atacacttaataattgggactcttcagcggatgcacgtcttcggcgttgagaacagggat
acgctgacacacaaggctactgggtattctgcgaaacttttaaagaagcctgatcagtgc
agagctgtatatgcttgttcacaccttttctgggttgatgatcaggatagcatcaaggat
ggggagagggtcttgctttgcttaaaacgtgctttaagaattgcaaatgccgctcaacaa
atggcgaatgcaactcgaggcagtggcggatctgtcacgctgttcattgaaatactgaac
aagtatctctatttttttgagaagggggtcacacagattacagttgcttctgtacagagc
ttgattgaattgatcacaaatgaaatgcaaggtgagaatgcaacaccagatccaaccgcg
gatgctttctttgcgagcacactacgcttcatccagttccagaaggataaaggcggtgca
gtgggtgaaaaatacgaggcaattaaggtttga
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