Coffea arabica (coffee): 113702157
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Entry
113702157 CDS
T11342
Name
(RefSeq) pre-mRNA splicing factor SR-like 1 isoform X1
KO
K12850
pre-mRNA-splicing factor 38B
Organism
carb Coffea arabica (coffee)
Pathway
carb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113702157
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
carb03041
]
113702157
Spliceosome [BR:
carb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
113702157
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Motif
Pfam:
PRP38
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
113702157
NCBI-ProteinID:
XP_027078985
UniProt:
A0A6P6TLQ7
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Position
7e:complement(11129015..11134223)
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AA seq
408 aa
AA seq
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MAEIQTSGRPIDQLLEKVLCMNILSSDYFRDLLRLKTYHEVIDEIYNQVDHVEPWMTGNC
RGPSTAFCLLYKFFTMKLTVKQMHGLLKHPDSPYIRAVGFLYLRYYADPKTLWNWYEPFI
KDDEEFAPGSNGRMTTMGVYIRDLLLGQYYFDTLFPRIPVPVLRSVVSNLEKLKLPTKHC
GTTGESTRGSDETARRPPSVKAALSVSFGQRAPHRASTRDSSPVRRTIPTPSYDRDDDSR
RSPSGRQSQSRELSDRDYIDRDRGRDRDRNRDRERDRDREQYRDRERDRDRDRERRYDYD
RRSRESGRDYERRSHDGSRHYSEGSSRRSRSRSRSRSQSMYEHSMHGDHRSSPRDGNREK
TTASSNLAKLKDIYGDLGNQKEDTGKDRGPNRDSGTEEVIRLGGSTWR
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atggcggagatacagacctctggcaggccaattgatcaattgttggagaaagtcctttgc
atgaatattctttcttctgattacttcagagaccttttgagattaaaaacttaccatgaa
gtgatagatgagatctacaatcaagttgatcatgtggagccatggatgactggcaattgt
cgtggtccttctacagcattctgccttctatataaattttttactatgaagctcactgtc
aagcaaatgcacggtctcttgaagcacccagactctccttatatcagagctgttgggttc
ctttacctaagatattatgctgatccaaagactctatggaactggtatgaaccatttatc
aaggatgatgaggaatttgctcctggatccaatggtcgcatgactacaatgggtgtttat
attagggacttgcttcttggacagtactattttgatactctttttcctcgcatccctgtt
cctgtgctgcgctctgttgtatccaatctcgaaaaactgaagcttccaaccaagcattgt
ggtaccactggggaatcaacacgtggatctgatgaaactgcccgtcggccaccatctgtt
aaggctgctctctccgtctcttttggtcagcgtgctccacatcgtgcatcaactagagat
tcatctcctgtccgacgcaccataccaacaccatcatatgatagagacgatgattcaaga
cgttcccccagtggtcgtcaaagccaaagccgtgagttgtctgaccgggattatatagat
agggatcgtggcagggacagggacaggaaccgagacagagagagggaccgggacagggaa
caatatcgggatagggagcgggacagagacagagatagagaacgaaggtatgactatgat
cgacggtcccgggaaagtggaagggattatgagaggaggagccatgatggcagccgacat
tatagtgaaggtagttcccgtaggagcaggagcaggagcagaagcagaagtcaaagcatg
tacgagcatagtatgcatggtgatcatcgtagttcacctcgagatgggaacagggagaag
actactgcatccagcaatctggcgaaacttaaagatatatatggcgatttgggcaatcaa
aaggaggacacgggcaaggacagggggcctaatagggatagtggcactgaggaggttatt
agacttggtggttctacttggaggtag
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