Coffea arabica (coffee): 113703219
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Entry
113703219 CDS
T11342
Name
(RefSeq) DNA mismatch repair protein MSH4 isoform X1
KO
K08740
DNA mismatch repair protein MSH4
Organism
carb Coffea arabica (coffee)
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
carb03036
]
113703219
Chromosome and associated proteins [BR:
carb03036
]
Eukaryotic type
Meiosis-specific proteins
Others
113703219
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Ortholog
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GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
Motif
Other DBs
NCBI-GeneID:
113703219
NCBI-ProteinID:
XP_027080316
UniProt:
A0A6P6TRS7
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Position
8e:complement(48792506..48806088)
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AA seq
795 aa
AA seq
DB search
MEDLEDAGEKSSFVVGLIENRAKEVGVAAIDLRSASLHLSQYIETSSSYQNTKTILQFYD
PMVIIVPPNKLAADGMVGISELVDKFCTSTRKVIVSRSYFDDTRGAVLVKNLAAKEPSAL
GLDTYYKQYYLCFGAAAATVKWTEAEKGVIITNHSLSVTFNGSFGHMNIDTTSVQNLEII
EPLQSTLCGTNNRKRSLFQMLKATRIVGGTRLLRANLLQPPKDIETINARLDCLDELMSN
EQLFFGLSQALRKFPKETDRVLCHFCFKPKKVTNGVLAIDNARKSQILISSIILLKTALD
ALPLLSKVLKDAKCFLLTNIYKSVCENEKYASIRKRIGEVIDEDVLHTRVPFVARTQQCF
AVKAGIDGLLDIARRSFCDTSEAAIHNLANKYREDYKLPNLKIPFNNRQGFYFSIPQKDI
NGKLPSKFIQVVKHGNNIHCSTLELASLNVRNKSAAKECYTRTELCLEELMDAIRQDVSV
LTLLAEVLCLLDMIVNSFANMISTKPVDQYTRPQFSYDGPLAIDSGRHPILESIHNEFIP
NNIFLSEASNMVIVMGPNMSGKSTYRQQICLIIILAQIGCYIPARFATVRIVDRIFTRMG
TMDNLESNSSTFMMEMKETAFIMQNVSPRSLIVMDELGRATSSSDGFAIAWSCCEHLLSV
KAYTIFATHMENLSELATIYPNVKILHFHVDIKNNRMDFKFQLKDGPRHVPHYGLKLAGV
AGLPSSVIETAKSITAKITEKEVRRMKINSLQYNDIQMVYRVAQRLMCLKYSNQDEDSIR
EALQGLKESILNGSL
NT seq
2388 nt
NT seq
+upstream
nt +downstream
nt
atggaagacctagaagatgccggagagaagtcaagcttcgtcgtcggcctcatcgagaac
agagccaaggaggttggagtggctgctattgacttgaggtctgcttctctgcatctctct
cagtacattgagacaagtagctcctaccagaatacaaagaccatactgcagttctacgat
cctatggtcattattgttcctccaaataagctggcagctgatggtatggttggtatctca
gaattggttgataaattttgcacatcaacaagaaaggttatagtgtctcgaagttacttt
gatgacaccaggggggctgtgctggtaaaaaatttagctgccaaagaaccatctgctctt
ggtttggatacctactacaaacaatattatctttgcttcggtgcagctgctgcgactgtc
aaatggactgaagcagaaaagggagtgatcatcacaaaccactcattgtcggttaccttt
aatggatcatttggtcacatgaatattgacacgactagcgtccagaatttggaaatcatt
gagcctctgcagtccaccctctgtggtacaaacaacagaaagagaagcttgtttcagatg
ctaaaggcaacaagaatagttggagggactagacttctgcgagccaatcttttgcagcct
ccgaaagatattgaaactatcaatgctcgacttgattgcctggatgagcttatgagcaac
gagcagctgttctttggcttgtcccaggctcttcggaagtttcccaaagagacagatagg
gtcctttgccacttctgctttaagccaaagaaagttactaatggagtgctggccattgac
aatgcaagaaagagtcaaatattgatatcaagtattatcctactcaaaacagctcttgat
gcattaccactactctcgaaggtccttaaggatgccaagtgttttctactgacaaatatt
tacaagtctgtttgtgagaatgaaaaatatgcttccataaggaaaagaattggggaggtg
attgatgaagatgtgcttcatacccgtgttccttttgttgcacgaacacagcagtgtttt
gctgtcaaggcaggaattgatggacttctggatattgcaaggagatctttctgtgacacc
agtgaagcagctatacacaaccttgcaaacaagtatcgtgaagattataagctaccaaat
ctgaaaatccctttcaacaatcgacaagggttttactttagcattccacaaaaggacatc
aacggaaaacttccaagcaaattcatacaggtcgtgaagcatggaaataatatccattgt
tctactttggaacttgcttctttgaatgtaaggaacaagtctgcagctaaagaatgctat
acaaggacagagctttgcctggaagaattgatggatgccatacgtcaagatgtatctgtg
cttacccttcttgcagaggtcttatgcctcttggatatgatagttaactcatttgctaac
atgatatcgactaagcctgttgatcaatatactagacctcaatttagttatgatggcccg
ctagcaattgatagtggaaggcaccctatcctagaaagcatccataatgagttcattcct
aacaatatcttcctttctgaagcatcaaacatggtaattgttatgggcccaaacatgagc
ggaaagagtacataccgtcaacaaatttgtttgataataatcctcgcgcaaattggttgc
tacatccctgcccgctttgctactgtgaggatagttgatcgcatatttacaaggatggga
accatggacaaccttgaatcaaactctagcacgtttatgatggagatgaaagagaccgcc
tttattatgcagaatgtctcccctaggagtctgattgttatggatgaactggggagagcg
acttcttccagtgatggatttgcaattgcatggagctgttgtgagcacctgttatcagtg
aaagcgtataccatatttgctactcatatggagaacttatcagaacttgccaccatttac
ccaaacgtaaaaattcttcactttcatgttgacataaaaaacaaccgtatggatttcaag
tttcaactaaaagatggaccacgacatgtaccacattatgggctgaaattagcaggagta
gctggattacctagttcagtgattgaaactgccaaaagcatcaccgcaaagattacagag
aaggaagtcagaagaatgaaaataaattctctacaatacaatgacatccaaatggtttac
cgcgtagctcaacgcttgatgtgtttgaaatattcgaatcaagatgaagattcaatccga
gaagcattgcaaggcctcaaggagagcatcctcaatggaagcctatag
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