Coffea arabica (coffee): 113703580
Help
Entry
113703580 CDS
T11342
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
carb Coffea arabica (coffee)
Pathway
carb03013
Nucleocytoplasmic transport
carb03015
mRNA surveillance pathway
carb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113703580
09122 Translation
03013 Nucleocytoplasmic transport
113703580
03015 mRNA surveillance pathway
113703580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113703580
03041 Spliceosome [BR:
carb03041
]
113703580
Enzymes [BR:
carb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113703580
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
113703580
Spliceosome [BR:
carb03041
]
Complex C
Other components
EJC/TREX
113703580
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
113703580
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
113703580
NCBI-ProteinID:
XP_071916966
UniProt:
A0A6P6U2I5
LinkDB
All DBs
Position
8e:587144..592802
Genome browser
AA seq
428 aa
AA seq
DB search
MGETKENDAYEEELLDYEEDDEKAPDSVSAKVNGESVKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQATLGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILA
LARDRDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVN
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagagacaaaggagaacgatgcttacgaggaggagcttctcgactatgaggaagat
gatgaaaaagcccctgactccgtctccgccaaagtcaacggcgagtccgttaaaaaaggc
tacgtaggtatccacagctccggattccgagacttcctactgaaaccagagcttctgcgt
gctattgtggattctgggtttgagcatccttccgaagttcaacatgagtgtattccacaa
gctaccttgggcatggatgttatttgccaagcaaagtctggcatgggaaaaactgctgtc
tttgttctctcaacattgcaacaaattgagcctgttgcaggtcaagttgctgcgcttgta
ttatgccataccagagagttggcctatcagatctgccacgagtttgagcggttcagcact
tatctccctgatataaaggttgccgttttctatggtggagtcaatatcaaaatccacaag
gatcttctaaagaatgaatgtcctcatattgtggttggaacacctggaaggattctggcg
ttggcaagagatagggatctctctttgaagaatgtccggcatttcatattggatgaatgt
gataagatgcttgagtctctggacatgaggagagatgtgcaggaaattttcaagatgact
cctcatgacaagcaagttatgatgttctcagcaacactcagcaaggagatccgcccagtt
tgcaagaagtttatgcaagatccgatggaaatctatgtggacgacgaagccaagttgacc
cttcatggtcttgtacagcattacatcaagttgagtgaactcgagaaaaaccggaagttg
aatgacctgcttgatgcgttggactttaaccaagttgtcatatttgtcaaaagcgtgaac
cgagctgctgagctgaacaaattgcttgtggaatgtaatttcccatctatctgcattcat
tcgggcatgtcccaggaagaaaggttgacacgctacaagggtttcaaggaggggcataag
aggattcttgtggcgacagatttggttggtaggggaattgacattgagagggttaacatt
gtcattaactatgacatgccagattctgcagacacttatttgcacagggttggtagagct
ggtagatttggcacaaaaggtcttgccattacgtttgtttcatcagcatctgattctgat
gtcctcaatcaggttcaggagaggtttgaagtggatataaaggagcttcctgagcagatt
gatacttctacatatatgccctcgtga
DBGET
integrated database retrieval system
