Coffea arabica (coffee): 113703774
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Entry
113703774 CDS
T11342
Name
(RefSeq) SNF2 domain-containing protein CLASSY 3-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
carb Coffea arabica (coffee)
Pathway
carb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
113703774
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
carb03400
]
113703774
DNA repair and recombination proteins [BR:
carb03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
113703774
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
Motif
Other DBs
NCBI-GeneID:
113703774
NCBI-ProteinID:
XP_071916787
UniProt:
A0ABM4VB86
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All DBs
Position
8e:complement(1219247..1244061)
Genome browser
AA seq
1047 aa
AA seq
DB search
MEEKRSTVVKRTKAQIKHKLEKKGESEGAHGSQEMNAIEGKKRDEEMIIISSSSSDEEQE
GENVHRKMFNRKRKGTAKKIFYDDESSGSDVRILGEEEVVEEVKLKELDRMRRRRRRRRD
TVYKGKNNDGGSGSDVVLITEEDIPRNLRCNYVKGRKHFPSGRKRGRSDGNATNERMTME
SEPLGNRAQDKGKGLLIKNLDALDSQSSSSEEDTDDSDHTNHWGYCSEDNLEGGIGKDDG
FIQLPSPKSRKQEPRLGTSRKRCLHVSKSESSDSSDQVPKKKKEGSRISKPCKRRERDVD
YMNILLGSMLKDDEQTKENPFSFEDNGPTNTLPLKFRFDDEDLTPPEKEDWQKEIDNLFT
EMEICLTLPDSDFTESSNSKDGTHHVTATAKCQAELCLSGKHQLILEEPIGIVCRCCQIV
HKEMKDIFPTLKKETPRRRDWVDLRRGECFGIHELHLDDPGSGNYYTSVDAEGSVLDLIP
DHIRMSMYSHQLDGFVFLWKNIVGETCIEKLKTELSDDGRGAIISHAPGTGKTCLTIVFI
LSLLKMYPMCRPVIIAPTSMLLTWENEFRKWGYRIPFHNFNSKDLSGNELKTDAEFLRRV
GSRMTKLYSWTKEKSVLGISYKLFEQIASGQKGKGSDEKLKEIFLQLPGLVVLDEGHTPR
NQQSLVWKVLTGVKTKRKIILSGTPFQNNFEELYNTLCLVNPKLSGSMNSESRSRRWQRK
SNVEKERWVSLTNAIDKNSGNAVEELKAMIDPFVHVHKGSILEESLPGLKDTLVILRPTD
EQKGILQLISDDRSRFDQVHLVSLISVHPSLAAFSKRFSGDKDRLRVLECSPYAGVKTKF
AIELIRLCDASHEKVIVFSEFIHPLRFIMQQLIDQLKWREGIEVLYMDGKRDEKNRQSSI
SSLNDPSGKVKVLFASTKACSEGINLSGASRVVLLDVVWNPAVERQAISRAYRLGQKKFV
YVYHLITSGTLEVEKYAQQANKDRLSELVFSSRDRQRIKSRISSVFEDKILEGMLDNKML
NDIFENVIHQPKESNVFANFNYVEHRD
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaagagaagcactgtagtgaagaggacaaaagctcaaataaagcacaagttg
gagaagaaaggggaaagtgagggagcccatggttctcaagaaatgaacgctattgaaggg
aaaaagagggatgaagaaatgattataattagcagcagtagcagtgatgaagagcaagag
ggagaaaatgtacaccggaagatgttcaatagaaagaggaaaggaactgctaaaaagatt
ttttatgatgatgagagcagtggaagtgatgttaggattttgggggaagaggaagtggtg
gaagaagtgaaattgaaggaattagataggatgaggaggaggaggaggaggaggagagac
actgtttacaagggaaagaataatgatggtggaagtggaagcgatgtcgtgcttataact
gaagaagatatcccccgaaacttgagatgtaattatgtcaagggtaggaagcattttcca
tctggaagaaagaggggtagaagtgatggaaatgcgacaaatgaaaggatgaccatggag
agtgaacctttagggaatcgagctcaggacaagggaaaaggtcttctaattaagaatctt
gatgctctcgactcacaatcctctagctctgaagaggatactgatgattctgatcataca
aaccattggggttattgtagtgaggataaccttgaaggagggataggaaaagatgatggc
ttcattcaactaccaagtccaaagtccagaaaacaggaaccaagactcggaacatcaaga
aagcgctgccttcatgtttctaagagtgaaagttctgattcatcagatcaggtgccaaag
aagaaaaaggaaggcagtagaatatctaaaccctgtaagagaagagaaagagacgtggat
tacatgaatattcttctggggtccatgctgaaggatgatgagcagacaaaggaaaatcca
ttttcttttgaagacaatggtcctactaatacactgccattaaaattcagatttgatgac
gaggatctaaccccaccggagaaagaagactggcaaaaagaaattgataatctttttact
gagatggaaatatgccttacattaccagattctgactttactgaatcatccaattccaag
gatggcactcatcatgtcactgcaacggccaagtgccaagcagaattatgtctctcaggg
aaacatcagctgattcttgaagaaccaattggaatcgtatgcagatgttgtcaaattgtg
cataaggagatgaaggacatatttcctacactgaaaaaggagactccacgaagacgggat
tgggttgaccttcgcagaggtgaatgctttggtattcatgagcttcatcttgatgaccca
ggctctggaaactattacacctccgttgatgctgaaggctctgtactggatcttattcca
gatcacattaggatgtcaatgtatagtcatcagctggatggatttgtcttcttgtggaaa
aacatagtaggagaaacctgcatcgagaagctgaaaactgaactttctgatgatggaaga
ggagccataatatcacatgcccctggcaccgggaagacctgcttgacaattgtttttatt
ctgtctctgttgaaaatgtatccaatgtgccgacccgtgattatagctcctacaagcatg
ctgctcacctgggaaaatgagttccgaaaatggggatatagaattccttttcataacttt
aatagcaaggatttgtcaggaaacgaactcaaaactgatgcagaatttcttcggagagta
ggaagccgaatgacaaagctgtactcgtggacaaaggagaaaagtgttctaggaatcagc
tacaagttgtttgagcagattgctagtggacagaagggaaaaggaagcgatgaaaaactt
aaggaaatctttcttcaactgcctggtcttgtggttcttgacgaagggcacacgcctcgc
aatcaacagagtcttgtctggaaggttttgacaggagttaagacaaaaagaaagataatc
ctctctggaactccttttcagaataacttcgaggagttgtataatactctttgcctggta
aacccaaagctttctggttcaatgaactctgagagtcgcagcagaagatggcagcggaag
agcaatgtggagaaagagagatgggtttccttgaccaatgccattgataagaactctggc
aacgcagtagaggagcttaaagccatgatagatccctttgtacatgtacacaaaggttct
atactagaagagagtctccctggtctgaaggacacacttgttattttgcgaccaactgat
gagcagaagggcattcttcagcttatatcggatgatcggagcaggtttgaccaagtacat
ttggtgtcactcatttctgtccacccctcattagctgctttcagcaaacgcttctctggc
gacaaagacagactacgggtacttgaatgcagtccttatgctggagtaaagacgaaattt
gccattgagctcatccgattatgtgatgcatcgcatgagaaggttatagttttcagtgaa
tttattcaccctttgagattcataatgcagcagttgatagatcagttaaagtggagggaa
ggcatagaagtgctgtatatggatggaaaacgtgacgagaagaatcgccagtcatcaatt
agttctctgaatgatccctccggtaaggtgaaagttctttttgcgtccacaaaagcttgt
tctgaaggaataaatcttagtggggcttcaagagttgttctgttagacgtcgtttggaat
cctgcagttgaaaggcaagcaataagcagagcatataggcttggccaaaagaagtttgtc
tatgtttatcatttgataacctctgggaccttggaggttgaaaagtatgctcaacaggct
aacaaagatcgcttgtctgagttggtattttcttctcgagacaggcaaaggatcaagtcc
agaatctcatctgttttcgaggacaaaatcttggaaggaatgcttgacaacaaaatgctg
aatgatatctttgagaatgttattcaccagccaaaggaatcaaatgtatttgcaaacttc
aattatgttgagcacagggattag
DBGET
integrated database retrieval system
