Coffea arabica (coffee): 113704165
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Entry
113704165 CDS
T11342
Name
(RefSeq) nuclear pore complex protein NUP85-like isoform X1
KO
K14304
nuclear pore complex protein Nup85
Organism
carb Coffea arabica (coffee)
Pathway
carb03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
113704165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113704165
03036 Chromosome and associated proteins [BR:
carb03036
]
113704165
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
113704165
Chromosome and associated proteins [BR:
carb03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
113704165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleopor_Nup85
Motif
Other DBs
NCBI-GeneID:
113704165
NCBI-ProteinID:
XP_027081679
UniProt:
A0A6P6TTD1
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Position
8e:complement(46129421..46138306)
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AA seq
715 aa
AA seq
DB search
MPGMTSDSGDHSTSVVPISPNPQPTTYPLHHGLKPPIARLSISWARGNTLRVTVLRQPQP
SAANGEEEAGGRVLEVKLSDNGDGEIDDAQWRRIAYGSVTPFALLQSRKNSTSTLSKISA
LDSTEWWQYIMEYSREINSLLGNPKPSPSLAIEDQKTVLKDVQKPTCFKAAWELMEIFYA
DQHSQAWIPERLLDWLADYDCLFSGTQPTVHSELVNFQKELVTRQAVEDHPKYWEAISST
LAIGWLEIGVKLLRLHGSYDFDQLGSRETENGLVEAVAVLISKMPRLRADLGADKLGECY
KNKPDFVKAWEKWRAQITKLDCSAFWLQCEHHQTRDGLKNILQTMLGNSTSLSNATFHWM
ELYIAHFLYIRPFTAGLESMYNLAQKCMQIKPVSGHHKLIGLLIGILGENPEVVLAECSK
SFGSWMMAHAAELLTAGNIQAEMLLQKEQFQLGGICIEELNRLVYAQVLSSHALTWQIAP
IYLSSCMKQGMGLLETVLSKQALQHDQVLLKSIEICRLYELGTVSSNLMKITAVHDWKHG
KKGSGVFWLQQARDEVRLNRIAKHLFDFVGKSLSDDSFKQWEGLIELLGPESGIAGGLEF
LNKYREFRRSLQQVHSGTATDAAQRAAEALISLMKNPSTPQRFWLPILHDSLKLFNWAGR
PLLNVSQTNVLLNKLQELSMARLRPDFVNADLPPEALNSVRLAIATNLGRAILEE
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgcccggaatgacatcagattccggagaccactccacttccgtcgtcccgatatcccca
aacccccagcctacaacctatcctctccaccacggccttaaacccccaatcgctcgactc
tcaatttcatgggcgcgtggaaacacgcttcgcgtcactgttctccgtcaacctcagccg
tctgctgccaacggcgaggaagaagccggcggtagagttttggaagtgaagctcagcgac
aacggggacggcgaaattgacgatgctcagtggcggaggatcgcctacggctcggtaact
ccatttgcgctgcttcagagccggaagaattcgacttcgactttgtcgaaaatctcagct
ttggacagtacagaatggtggcaatacattatggaatatagtagggagataaattctctc
cttggtaacccaaagccgtctcctagtttagccattgaagatcaaaagacagtgctaaag
gatgtccaaaagccaacatgtttcaaagctgcctgggagctgatggaaatattttatgca
gaccagcactctcaagcttggatccctgaaaggcttcttgattggttggctgattacgat
tgtctattctctggtactcagccaactgtccattcagaacttgtaaactttcaaaaggaa
ctggtcactcggcaggcagttgaagatcaccccaagtattgggaagcaatatcatcaaca
ttggcaattggctggctggaaattggggtgaaattgctgcggttgcatggatcatatgac
tttgatcagctcgggagtcgtgaaactgaaaatggattagtggaagcagtcgctgtgctt
atatcaaagatgccacgtttgcgcgctgatctgggagcagacaaattaggcgaatgttat
aagaacaagcctgattttgtgaaggcttgggagaaatggcgagcacaaataactaagctg
gactgcagtgcattttggcttcaatgtgagcaccaccagacaagggacgggctgaaaaat
atacttcaaaccatgcttggaaactccactagtttgtccaatgcaacatttcattggatg
gagttgtacattgctcattttttgtacatcagacccttcactgctggtttagaaagcatg
tacaacttagctcaaaagtgcatgcagataaaaccagtttctggtcaccataaattgatt
ggacttctaattggaattcttggcgaaaatccagaggttgtcttagcagagtgctcaaaa
tcatttggctcctggatgatggcacatgctgcagaattgttgacagctgggaacattcaa
gctgaaatgcttttgcagaaggaacaatttcaattggggggaatctgcattgaggagctg
aatcgacttgtatatgcccaagttctatcttctcatgccttgacttggcagattgctcca
atatatttgtcttcctgtatgaaacaaggaatgggtttgttggagacagtattgagcaag
caagccctacaacatgatcaagtacttctaaagagcatagagatttgccgcctttacgaa
cttggaactgttagttctaacctgatgaagataactgcagtgcatgattggaaacatgga
aagaaaggttcaggagtcttctggcttcagcaagctcgagatgaagtccgtttaaataga
attgcaaagcatttgtttgattttgtcggaaagtcattatctgatgacagtttcaagcaa
tgggaaggacttattgaattgctaggacctgagtcagggattgctgggggactcgagttt
ttgaacaagtacagggaatttaggcgttctcttcagcaggttcacagtggaacagctact
gatgctgctcagagagctgctgaagcccttatatcacttatgaaaaacccctctacacct
cagagattttggctgcctattctacatgattcgttgaaattgtttaactgggcagggcgt
ccattgcttaatgtctcacagactaatgtgttgttgaataaactgcaagagttgtcaatg
gcaagattgcggccagattttgtcaatgctgacttgccacctgaagccttgaactctgtc
agattagctattgccactaatcttggacgtgctattcttgaggagtga
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