Coffea arabica (coffee): 113704297
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Entry
113704297 CDS
T11342
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 4-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
carb Coffea arabica (coffee)
Pathway
carb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113704297
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113704297
Enzymes [BR:
carb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
113704297
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113704297
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
113704297
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-GeneID:
113704297
NCBI-ProteinID:
XP_027081905
UniProt:
A0A6P6TUF6
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Position
8e:13130249..13139096
Genome browser
AA seq
391 aa
AA seq
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MWRASYFFFPRFSSPSYSSSTICLCKMSCKAGPVIPKFIPVETSEITSISKPDGMRFSLV
SYNVLAQAYVKSALFPHSPSSCLKWKARSQATLTVLKNLGADFLCLQEVDEYDSFYMMNM
ENLGYSSIYVQRSGQKRDGCAIFYKRTSAELVLEQAIDYNDLINSIEDTAASSGDKDGVS
IPSGNADNELKDDLCKAPGDHGDLNDPRVRLKRDCVGVMAVFKLKVPSCDPIIIANTHLY
WDPELADVKLAQAKYLLSCLAQFKQLVSSQLDCTPSIIVAGDFNSVPGDQVYQYLVSGSS
LPEHLPESRDDQPLPLSSVYAYTRGEPHFTNCTPGFTGTLDYILFSPTGDVKPVSFLELP
ESESPDVIGGLPNHYHPSDHLPIGAEFEVLQ
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
atgtggagagcaagttactttttcttccctcgcttctcttctccttcctactcttccagt
acaatttgtttgtgcaaaatgagctgcaaagcaggtcctgtaatacccaaatttattcct
gttgagacaagtgaaattacatcaataagtaagcctgacggcatgaggttcagccttgtg
tcatataacgttctggctcaggcatacgtgaagagtgctttgtttccacactctccctca
tcttgcctcaaatggaaagctcgatctcaagcaacattgacagttctcaagaatcttgga
gcagattttctttgcttacaggaagtagatgagtatgatagcttctacatgatgaatatg
gagaatcttggctactcaagtatctatgttcaaagaagtggacaaaagcgtgacggatgt
gctatcttctataagcgtaccagtgcagagctggtcttagagcaagcaatagattacaat
gatctcataaactctattgaagatacagcagcttcatctggtgataaagatggtgtttca
ataccaagtggaaacgctgataatgaattaaaagatgatttgtgtaaagctccaggagat
catggtgatcttaatgatcctcgtgttagactgaaacgtgattgtgttggtgtcatggca
gtctttaaactcaaagttccttcctgtgaccctattatcattgccaatacccacctttac
tgggatccagaattggctgatgtcaagcttgcacaagctaaatatctactttcctgctta
gctcaatttaagcagctagtttctagccaattggattgcacaccttccataatcgtggct
ggtgacttcaattcagtccctggagatcaggtgtatcagtaccttgtttctggctcgtct
ttgcctgagcacctgccagaaagtcgggatgatcaaccccttcctctatctagtgtttat
gcctacacaagaggggaaccacactttacaaactgcactcctgggttcacaggaactctc
gattatatcttattttctcctactggagatgtaaagccagtcagtttccttgaacttcca
gaatcagagtcccctgatgtgataggtggattaccaaatcattatcacccaagtgatcat
ctcccaattggtgctgaatttgaagttctccagtag
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