Coffea arabica (coffee): 113704379
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Entry
113704379 CDS
T11342
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
carb Coffea arabica (coffee)
Pathway
carb03030
DNA replication
carb03420
Nucleotide excision repair
carb03430
Mismatch repair
carb03440
Homologous recombination
carb03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
113704379
03420 Nucleotide excision repair
113704379
03430 Mismatch repair
113704379
03440 Homologous recombination
113704379
03460 Fanconi anemia pathway
113704379
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
carb03000
]
113704379
03032 DNA replication proteins [BR:
carb03032
]
113704379
03400 DNA repair and recombination proteins [BR:
carb03400
]
113704379
Transcription factors [BR:
carb03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
113704379
DNA replication proteins [BR:
carb03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
113704379
DNA repair and recombination proteins [BR:
carb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
113704379
MMR (mismatch excision repair)
113704379
DSBR (double strand breaks repair)
HR (homologous recombination)
113704379
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
zf-CCHC
DUF223
DUF936
Motif
Other DBs
NCBI-GeneID:
113704379
NCBI-ProteinID:
XP_027082062
UniProt:
A0A6P6TVY1
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All DBs
Position
8e:complement(5665031..5669164)
Genome browser
AA seq
871 aa
AA seq
DB search
MERPAMQLTEGAIAMLSDRDAQQNPDLKPVLQVMDVRLVNTQNHQNATERYRLVLSDGVN
TQQGMLATQQNVLVNSKRLQNGSIIQLTQFVCNVIQNRMIIIIIDLEVIRETCDPIGEPK
PYLLRNSNDVSAQRPSASAHVVNQPVSVTGSPQSASAGSTIGGSAPRPNITGVTRMQPPE
MDSGAVSHTYGSSFVGKPDSGRYNPTMAPPVYSKAEPGSGTSRSSVNSYLQPPQPSYQHP
SPVFTNRGPIARNEAPPRIIPIVALNPYQGRWTIKARVTAKGELRHYNNPRGDGKVFSFD
LLDSDGGEVRVTCFNMVADQFYNQVELGKVYMISKGTLKPAQKAFNHLKNEYEIHLDNTS
IIQPCIEDDRSIPQQQFHFRSIGEIEGMDNNSVVDVIGVVSSISPSSSVMRKNGTETQKR
SLQLKDMSGRSVELTLWGNFCNAEGQTLQNICDSGVFPVLAVKSGRINDFNGKAVGTIST
SQLFINPDFPEAHKLKEWFDSDGKSTPSVSISRETAGIVRTDVRKTISQIKDERLGTSEK
PDWITVCATLSFIKLDNFCYTACPNRIGDRQCNKKVTNNGDGRWKCDRCDQTFDECDYRY
ILQLQIQDHTGLTWVTAFQESGEEIIGESAKNLYYMKYEEQDDDRFNEIMRSIVFKKYIF
KLKVKEETFSDEQRVKSTVVRAERINFESETRYVLDLVDKMKNDDNGSLPVKTENVIPSS
GQNITGFGSGTRDPASSMSNYNASTVSIGRESGLNTNYQGTSHGSQSGGSRFPPTRQTGM
YSNCTSCGGTGHSSVNCPSVASNQGQSYGGSFSNRVSSAANAGGGECFKCHQSGHWARDC
PGLVNAPPAYGSRHATPGRYGNVSRQHVGGY
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atggagcggccagcgatgcaactcacggaaggggcgattgcgatgctatcggaccgcgac
gcgcagcagaacccggatttgaagccggttttgcaagtgatggatgtgagattggtgaac
acgcagaatcatcaaaatgctactgagagataccggctggtgttgtcggacggtgtgaat
actcagcaagggatgttggcgactcagcaaaatgtgttggttaactcgaagaggttgcag
aatgggtctattattcaattaactcagttcgtctgcaatgtcatccagaatcgcatgata
attattatcatcgatttggaggtgatacgggaaacttgtgatcctattggtgaaccgaag
ccttacctgcttaggaacagcaatgatgtttccgcccagaggccgtctgcatcagctcat
gttgtaaatcagccagttagtgttactggcagccctcaatctgctagtgctggttcaacc
attggtgggtcagctcctagaccaaacatcactggggtaactcgtatgcaacctcctgag
atggattctggtgcagtttcacatacctatggcagttcctttgtgggtaaacctgattct
ggacgatataatccgacaatggcaccccctgtgtactcaaaggcagagcctggttctggt
acttcaagatcatcagtaaatagctatctgcaaccacctcagccatcatatcagcatccg
tcaccagtgttcacaaacagaggacccatagctaggaatgaagcacctcctagaattatt
ccgattgttgcattgaatccctatcaaggtaggtggactattaaggccagagtcacagca
aaaggggaacttagacactataataatccccgcggtgatggtaaagtattttcttttgac
cttcttgattctgatggtggagaagtacgggtgacctgcttcaacatggtggctgatcaa
ttctacaatcaggttgagctgggtaaggtgtatatgatttcaaaagggacattgaaacct
gctcaaaaagctttcaatcacctaaaaaatgagtatgagatccacctggataatacttca
ataattcagccttgcattgaggatgacagatcaattccgcaacagcagtttcattttcgc
tccattggtgagattgaagggatggataacaacagtgttgtggatgtcattggtgttgta
tcttctattagcccctctagcagtgtaatgagaaaaaatggtacagaaactcagaaaaga
agtctccagctaaaggacatgtctggtagaagtgtagaattgactttatggggaaacttt
tgtaatgccgaaggtcagacacttcaaaatatttgtgattcaggggtcttccctgtttta
gctgtcaaatctggtagaatcaatgatttcaatgggaaagcagtggggacaatatccact
agccagttgtttataaatccagattttcctgaggcccataaactgaaggagtggtttgac
agcgatggaaagagcaccccatctgtatctatctccagggaaacagcaggtattgtccgt
acagatgtgcgcaaaactatatctcaaattaaagatgaaaggctgggcacttctgagaag
cctgactggatcactgtatgtgctactctttcatttataaaactggacaacttttgttat
actgcttgtcccaacagaattggggatcggcaatgcaacaaaaaggttacaaataatggt
gatggaagatggaaatgtgataggtgtgaccagacttttgatgaatgtgactacagatac
attctccagcttcagattcaggatcacacaggtttaacatgggttactgcttttcaggaa
tctggtgaggagatcattggcgaatctgcaaaaaatttgtattacatgaaatatgaggag
caagatgatgacagattcaatgaaataatgcgtagtattgtctttaagaaatatatcttt
aaattgaaggtaaaggaggagacttttagcgacgagcagcgtgtaaagtctacagtagtt
agagctgagagaatcaattttgagtccgaaaccagatatgtgctggacttggtagataag
atgaaaaatgatgacaatggttctctacctgtgaagacagaaaatgtcatcccaagctct
ggacaaaatattactggttttggaagtggaactagagatcctgcatcctctatgtcaaat
tataatgcaagtacagttagtatcggtagggaaagtgggttaaacacaaattaccaagga
acttcccatggaagtcaatctggtggttctaggtttcctccaaccaggcaaactggcatg
tattccaactgtacgagctgtggtggaactggtcacagctctgtgaactgtccaagtgtt
gcaagtaatcagggacagtcatatggtggtagctttagcaatagggtatcttctgctgca
aatgctggtggtggtgagtgcttcaaatgccatcaatcagggcactgggcaagggattgt
cctggtctagtaaatgctcctccagcttacgggagcagacatgcgacacctggtagatat
gggaatgtatcaaggcagcatgttggtggttattga
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