Coffea arabica (coffee): 113704786
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Entry
113704786 CDS
T11342
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
carb Coffea arabica (coffee)
Pathway
carb03030
DNA replication
carb03410
Base excision repair
carb03420
Nucleotide excision repair
carb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
113704786
03410 Base excision repair
113704786
03420 Nucleotide excision repair
113704786
03430 Mismatch repair
113704786
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
carb03032
]
113704786
03400 DNA repair and recombination proteins [BR:
carb03400
]
113704786
DNA replication proteins [BR:
carb03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
113704786
DNA repair and recombination proteins [BR:
carb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
113704786
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
113704786
NCBI-ProteinID:
XP_027082461
UniProt:
A0A6P6TX33
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Position
1e:complement(43254766..43348094)
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AA seq
1030 aa
AA seq
DB search
MQSDIRKWFMKQHDKSSAGNGNAAKPKTAEKPAVAASHLDDSVKEGQESASRRKTSKYFA
SDKQKAKDVKEIEEFSAKRKAPTASKEIHGDVKPPPGKKVHKNGDDDNDEDFVDTTPRKV
STPSKKLKSGSGRGIARKSADVDESDEDDVTETKSHSKPAGRGRGGKSGTTAPGSRKGMV
VDESDEDEPGDKESKSAKPGGRGRGGRGSSATPSGGRGRGGGGYGGFMNFGERKDPPHKG
EKEIPEGAPDCLTGLTFVISGTLDSLEREEAEALIKRYGGRITGSVSKKTNYLLCDEDIE
GRKSTKAKELGTAFLTEDGLLDMIRKSNKSKTTEPQELKKPVAKVLPSPSKKSTPTPASK
NHVGSLSTKGAAVKGSSASVTSAKLKSQATEEAWLPWTGKYRPKVPNDIIGNQSVVKQLH
EWLRSWNEQFLKTSSKNGGKKQNDSGAKKAVLLSGTPGIGKTTTAKLVSQMLGFRTIEVN
ASDNRGKADAKIGKGIGGSTANSIKEVISNEGLGLNMERSQHPKTVLIMDEVDGMSAGDR
GGVADLIASIKISSIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLLHVANAE
GLQVNEIALEELAERVNGDMRMALNHLQYMSLSMSVIKYDDIRQRLQSSSKDEDISPFVA
VDKLFGFNAGKLRMDQRFDLSMSDPDLVPLLVQENYINYRPSSAGKDDNGLKRMILLARA
AESIANGDIMNVQIRRYQQWQLSQASSLSSCIIPASLLHGQRETLEQGERNFNRFGGWLG
KNSTMGKNYRLLEDMHVHLLASRESYLGRSTLRLDYLTLLSKQLTHPVRVLPKDEAVEKV
VNFMDSYSISQEDFDTILEISKFKGHPSPMDGVQPAVKAALTKAYKIGTDSRKIRTADLV
SFQRRDGSGSRVIKTVDMVPGTKKALKKRVAAMLEPVEESLAEENGDALEENEENSSDAE
DLEDSDNTDKGLQADLQSLKSKGIEVQLNLKGSENSSAKKGSSARGKRSSEPAEKKGGGR
GSGSASKRKR
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atgcagtcagatataaggaagtggttcatgaagcaacatgataagagcagcgctggaaat
ggcaatgctgctaagcctaaaacagcagagaagcccgctgtggctgcttcacatctggat
gattcggtaaaagaagggcaagaaagtgccagcagaaggaaaactagcaaatattttgct
tcagataagcagaaggctaaagatgtgaaggaaatagaggagttttcagcaaaaaggaag
gccccaacggctagcaaggagatacacggtgatgtgaagccgccaccagggaagaaagtc
cacaaaaatggggatgatgataatgatgaagactttgttgatactactccaaggaaggtt
tctactcctagcaagaaattaaaaagtggttctggaagaggaattgcacgaaagtctgca
gatgtggatgaaagtgatgaggatgatgtcacagagacaaaatctcattcaaagccggca
ggaagagggcgtggtggaaaaagtgggacaacagctccaggaagcagaaaagggatggtt
gttgatgaaagtgatgaagatgagcctggtgataaggagagtaaatctgctaaacctggt
ggacgaggccgtggtggaagaggttcatcagctacaccaagtggtggacgaggcagaggt
ggtggaggttatggtggatttatgaactttggtgaaaggaaagatcctccgcataaagga
gaaaaggaaattcctgaaggtgcgcctgactgtttaactggtttgacctttgtaatcagt
ggtacactggatagtttggaaagagaagaagctgaggccttaatcaaacgctatggtggt
cggattactggatctgtcagcaaaaagacgaattatcttctgtgtgatgaagacattgag
ggacggaaatctactaaagcaaaagagcttgggactgcttttcttactgaggatgggttg
cttgatatgattcgcaaatcaaataaatcaaaaacaactgaaccacaagaattaaagaaa
ccagtggccaaggttcttccttctccttcgaagaaaagtactccaacgccagcatcaaag
aatcatgtaggcagcttgtccacaaaaggtgcagctgtcaaaggctcaagtgccagtgtc
acttctgcaaagctgaaaagtcaagctacagaagaagcttggttgccttggactggaaag
tacagaccaaaggtaccaaatgacatcattgggaatcagtcagtggttaagcaacttcat
gagtggctaagaagttggaatgagcagtttctgaaaactagcagcaaaaatggggggaag
aaacagaatgactctggtgctaagaaggctgttctattaagtggtacacctggtatagga
aaaactacaacagcaaagttggttagtcagatgctgggtttcaggacaattgaggttaat
gctagtgacaaccgtggaaaggctgatgccaaaattggcaaaggaattggtgggagcact
gctaattcaataaaagaggttattagtaatgaaggacttggccttaatatggagcgctct
cagcatccaaaaacagttttaatcatggatgaggtggatggcatgtctgctggtgataga
ggtggtgtggctgatcttattgctagtatcaagatttctagcattcccataatctgtatc
tgtaatgatcgctacagccagaaactaaagagtcttgtgaactactgcttgcttcttagc
tttcggaagcccacaaagcaacagatggcaaagaggctattgcatgttgcaaatgctgaa
ggtcttcaagttaatgagattgcgcttgaggaattggcagaaagagttaatggagatatg
cgcatggcacttaaccatttgcagtacatgagcctctccatgtcagtcattaagtatgat
gacataaggcaacgccttcagagcagttcaaaagatgaagatatttcgccttttgtggct
gttgataagctgtttggttttaatgctgggaaattgcggatggatcaacgttttgattta
agcatgagtgatcctgatcttgttcctctgcttgttcaggagaactatatcaattatagg
ccaagttcagctgggaaagatgataatggtttgaaaaggatgattcttcttgcccgggct
gctgagtcaattgccaatggtgatattatgaatgtacagattcgaagatatcaacagtgg
cagctctctcaagctagctccctttcatcttgtataatacctgcttctttgttacatggg
caaagagaaacacttgaacagggagagcgcaacttcaataggtttggtggctggctggga
aagaactccactatgggaaagaattacagactgttagaggacatgcatgtccatctactt
gcatctcgtgaatcttatttgggcaggtcgacattgcgattggactaccttactcttctt
tctaagcagttgactcatccagtacgagtgctgcccaaggatgaagctgtagagaaggta
gtaaatttcatggattcatactccatcagtcaggaagattttgatactatattggagata
tccaagttcaaggggcacccaagtcctatggatggagttcagcctgctgtcaaagctgct
ctaacaaaggcttacaaaatagggacggactcacgtaagattcggacagcggatctggtg
tctttccagagaagagatggaagcggctcacgtgtgattaagactgtagatatggttcct
gggacaaagaaggcccttaagaaacgggttgctgcaatgctggaaccagtggaagaaagt
ttagcggaggagaatggtgatgcattagaagaaaatgaagagaattcttcagacgcagaa
gacttggaagactcagataatacagataaagggctgcaagcagatctccaaagcctgaag
tcgaaaggcattgaagtacaactgaacttgaaaggttctgaaaattcaagtgccaagaag
ggatcgtcagcaagaggaaaacgcagttctgaacctgctgaaaagaagggtggaggacgg
ggatccggatctgcgtccaagaggaagagatga
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