KEGG   Coffea arabica (coffee): 113706314
Entry
113706314         CDS       T11342                                 
Name
(RefSeq) histone deacetylase 9 isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
carb  Coffea arabica (coffee)
Pathway
carb03082  ATP-dependent chromatin remodeling
carb03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:carb00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    113706314
   03083 Polycomb repressive complex
    113706314
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:carb03036]
    113706314
Enzymes [BR:carb01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     113706314
Chromosome and associated proteins [BR:carb03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     113706314
   HDAC complexes
    Sin3A-HDAC complex
     113706314
    BRAF-HDAC complex
     113706314
    REST complex
     113706314
    SHIP complex
     113706314
    MiDAC complex
     113706314
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     113706314
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    113706314
  Chromatin remodeling factors
   NuRD complex
    113706314
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 113706314
NCBI-ProteinID: XP_027083992
UniProt: A0A6P6U1N9
LinkDB
Position
1e:complement(45298602..45304470)
AA seq 430 aa
MRSKDRISYFYDGDVGNVYFGPNHPMKPHRLCMTHHLVLAYQLHKKMEVYRPHKAYPVEL
AQFHSADYVEFLHRITPSTEHLFPNELAKYNLGEDCPVFENLFEFCQIYAGGTIDAAHRL
NNELCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKHHARVLYIDIDVHHGDGVE
EAFYFTNRVMTVSFHKYGDMFFPGTGDVKEIGEREGKFYAINVPLKDGIDDNSFTRLFKT
IISKVVETYLPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLITGGGGY
TKENVARCWAFETGVLLDMELPNEIPENDYIKFFEPDYSLKIPGGHIENLNSKSYLGTIK
MNVLENLRYIQHAPSVQMQEVPPDFYLPDFDEDEQNPDERMDQHTQDKQIQRDDEYYDGD
NDNDHNMEDM
NT seq 1293 nt   +upstreamnt  +downstreamnt
atgcgctccaaggacagaatctcctacttttatgacggggatgtgggaaacgtatacttt
gggccgaaccatccgatgaagccgcatcgcttatgtatgacccatcatttagttctcgcc
tatcaactccacaagaagatggaagtttataggccgcacaaagcgtatcctgtggagcta
gcgcagtttcattcggctgattatgtggagtttctgcataggattactcccagcactgag
catttgttccctaatgaattggcgaagtataatctcggcgaagattgccctgtgttcgaa
aacttgtttgagttttgccaaatttatgctggaggaacaatagatgcagcacacagattg
aataatgagctttgtgacattgccataaactgggctggtggattgcaccatgccaagaag
tgtgaggcatctggattttgttacattaatgatctagttcttggaatcttggagcttctt
aagcatcatgccagagtgctgtacattgatattgatgtgcatcatggggatggtgtagaa
gaggccttttacttcactaatagggttatgactgttagtttccacaagtatggcgatatg
ttttttcctggaactggtgatgtcaaggaaattggagaaagagaaggaaaattttatgcc
atcaatgtccctctcaaggatggaatagatgataacagctttactcgactcttcaaaacc
attatttcgaaggttgttgaaacatacttacctggggcaattgttctccaatgtggggca
gattctctcgcaggggatcgtttgggctgcttcaacctttctatagatgggcatgctgaa
tgcgttcgttttgtgaagaaattcaatttgccccttctgataactgggggtggaggatac
accaaagagaatgttgctagatgctgggcttttgaaactggagttcttttagacatggag
cttcctaatgagatcccagaaaatgattacatcaaattttttgaaccagactattcgctg
aagattcctggtggacacatagaaaaccttaatagcaagtcctatcttggcacaataaag
atgaatgtactggaaaatcttcgttacatacaacatgctcctagtgtacagatgcaagag
gtacctccagatttttacctgcctgattttgatgaagatgagcagaatcctgatgaacgc
atggatcaacatacccaagacaagcaaatccagcgtgatgatgaatattatgacggtgac
aatgacaatgatcataacatggaggatatgtga

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