Coffea arabica (coffee): 113706822
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Entry
113706822 CDS
T11342
Name
(RefSeq) protein argonaute 5 isoform X1
KO
K11593
eukaryotic translation initiation factor 2C
Organism
carb Coffea arabica (coffee)
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113706822
03036 Chromosome and associated proteins [BR:
carb03036
]
113706822
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
113706822
Chromosome and associated proteins [BR:
carb03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
113706822
RNA interference (RNAi) pathway
RITS (RNA-induced transcriptional silencing) complex
113706822
microRNA pathway
RISC loading complex
113706822
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Piwi
ArgoN
PAZ
ArgoL1
ArgoL2
ArgoMid
Motif
Other DBs
NCBI-GeneID:
113706822
NCBI-ProteinID:
XP_027084648
UniProt:
A0A6P6U230
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All DBs
Position
1e:45799484..45805679
Genome browser
AA seq
959 aa
AA seq
DB search
MSGRGRGRGGGGPGSGGGGRGSLSPAFGRSRGRGRGRDGGRGSSSGYNAPPPQPAGASAA
GSSSSASTISRELQQKLTFQASSSGSEVPVQRPEEQAVTEERKLPPASSKATRFPQRPGF
GTVGQKCVVRANHFLVGVADRDLHHYDVSITPEVSSKKVCRDVMRELVKSHKLSHLGNRA
LAYDGKKNVYAAGPLPFSSKEFIIKLSDKGDGPKREREFKVSIKFASKADLHHLQQFLRS
EQLDVPQETIQALDVVLRESPSNNYTVVGRSFFHPTLGGRGELGDGVEYWKGFYQSLRPT
QMGLSLNIDVSATAFYEPISVLDFIAKYLNIRDLNRLSDQDCIKVKKALTRLRVQHTYLG
HVRRYRISGISDKPTNKLTFVCDGIDVSVVQYFAEKYKIVLRHATLPALQSGSAYLPMEV
CTIVEGQKYSRKLNDRQVTALLRATCQRPREREQSIRDMVMRNNYNNDQLVHQEFGIQVK
PELTSVEARVLPPPTLKYHATGGEPRVNPRVGQWNMINKKMVNGGKVDSWACVSFSRNLD
ASRFCQDLIRMCSSKGMVFASGPVLPIQSAHPGQIEKTLFDIHANSTARLRDCAVKYLQL
LIIILPDLSGSYPKIKRVCETELGIVSQCCQPRHVRKPNNQYLENVALKINVKVGGTNAV
LEQAVQKKIPFLTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEATKYRGLVSAQH
HRVEIIQDLYNCYEDPKRGMVHGGMIRELLRAFWSSTRLKPERIIFYRDGVSEGQFNQVL
LEEMDAIRKACASLQQDYLPRVTFVVVQKRHHTRLFPANHGDRNLTDRSGNILPGTVVET
KICHPTEFDFYLCSHAGIQGTSRPTHYHVLYDENGFTADALQTLTNNLCYTYARCTKSVS
IVPPAYYAHLAAFRARYYMEGEYSDGGSSSGGRATREQRAELRQLPAIKDNVKDVMFYC
NT seq
2880 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaagaggacgcggacgtggcggtggaggtcccggcagcggcggcggtggtcga
ggctcactctcgccggcttttggacgtagccgtggccgtggccgtggacgcgatggtgga
cggggatcatcgtccggctacaatgcaccaccaccgcagcctgctggtgcttcggcagcc
gggtcgtcgtcgtcggcttcgacgataagccgggagttgcagcaaaagttgacctttcag
gcttcgtcctccgggagtgaagttcccgtacagaggccagaggaacaggctgtgacggag
gagaggaaactgccgccagcgtcgtcgaaggctacaaggtttccgcagaggccgggcttt
ggaactgtgggtcagaaatgtgtggttagggctaaccattttctcgttggagtggctgat
agggatctacatcactatgatgtatcaattactccggaagtgtcatcgaagaaagtatgc
agagatgtcatgagggagcttgtcaaaagccacaagctgtcacacttgggtaaccgagcg
ctggcttatgatggaaagaaaaatgtctatgctgctggcccgctgcctttttcttcgaag
gagttcattatcaagctttctgacaaaggtgatggaccaaagagggaaagggagtttaag
gtctctattaagtttgctagcaaggctgaccttcatcatcttcaacagtttttgagaagc
gaacagcttgatgtaccgcaagaaaccatacaagcacttgatgtggttctgagagaaagc
ccatctaacaattatactgttgtgggaaggtcattcttccatccaactttgggtggtaga
ggtgaacttggtgatggggtagagtattggaagggattttaccagagccttcgtccaact
cagatgggcctctcactcaatattgatgtgtcagctacggcattttatgaacccatttca
gttctggatttcattgccaagtacttgaacatcagagacctaaaccgtctatctgatcaa
gattgtatcaaggtgaaaaaggctctcacacgtcttagggtgcaacatacttatctgggg
cacgtgagacgctacagaatctcaggcatttcagataaacccacaaacaagttaacattt
gtctgtgatggaattgacgtttctgttgttcaatactttgctgagaagtacaaaattgta
cttagacatgcaacgttgcctgcattgcaatctggaagtgcatatctgccaatggaggtt
tgtacaattgttgaggggcaaaaatattcaagaaagttaaatgacagacaggttacagct
ttgctaagggctacatgtcaaagaccaagggagagagaacaaagcatcagggatatggtt
atgcgtaacaattacaacaatgatcagcttgtacatcaggaatttgggattcaagtgaag
cctgagcttacttctgttgaagctcgggttcttccacctcctacgctcaagtatcatgcg
accgggggagaaccaagggtaaatccaagggttggacaatggaatatgatcaacaagaaa
atggtgaatggcgggaaggtggactcatgggcttgtgtcagcttctcgcggaatcttgat
gcaagcaggttctgtcaggacttgattcgtatgtgctcgagcaaaggaatggtatttgcc
tcagggccagtgcttcccattcaatcagcccatcctggtcaaattgagaagactctgttt
gatattcatgccaattctactgctagacttagagattgtgcagtgaaatacctgcagttg
ttaattataattctaccagatctcagtggatcttacccaaagatcaagcgagtgtgtgaa
acagagttgggaattgtttcacagtgttgtcagcctaggcacgtgcgaaaacctaataac
caatatcttgaaaatgttgctcttaagatcaatgtcaaggttggtggaacgaatgcggtt
ctagagcaagctgttcaaaagaaaataccgtttctgactgaccgtccaacaattattttt
ggtgctgatgttacacaccctcaaccaggggaggattctagcccctctattgcagcggtg
gttgcttcaatggattggccagaggctacaaaatatagagggctagtttctgctcagcat
cacagggtggagataatccaggatctctacaattgttatgaggacccaaaaaggggcatg
gtgcatggggggatgataagggagctgctgcgtgctttctggagctcaactcgacttaag
cctgaaagaatcattttctacagagatggagtaagtgaaggtcaatttaaccaagtttta
ttggaagaaatggatgccatccgaaaggcttgtgcttcactacagcaagattatttgcca
cgagtaacctttgtggtggtgcagaagagacaccatacacgtctcttccctgctaatcat
ggagatagaaatttaactgacaggagtggcaatattttgccaggtactgttgttgaaacc
aagatttgccacccaactgagtttgacttctatctttgcagccatgctgggattcaggga
acaagccgtccgacccattaccatgtgctttatgatgagaacggattcactgcagatgct
ttgcaaacgttgacaaacaatttatgttacacgtatgcaaggtgtactaaatcagtttcc
attgtgccacctgcttattatgctcatttagctgcattccgagctcgctattacatggaa
ggtgaatactcggatggtggttctagcagcgggggtagggctacaagagaacagagggca
gagctccggcagctaccagccatcaaagataacgtcaaggatgttatgttctattgctga
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