Coffea arabica (coffee): 113707038
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Entry
113707038 CDS
T11342
Name
(RefSeq) probable polygalacturonase At3g15720
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
carb Coffea arabica (coffee)
Pathway
carb00040
Pentose and glucuronate interconversions
carb01100
Metabolic pathways
Module
carb_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
113707038
Enzymes [BR:
carb01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
113707038
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
End_N_terminal
TGF_beta
Motif
Other DBs
NCBI-GeneID:
113707038
NCBI-ProteinID:
XP_071919917
UniProt:
A0ABM4VK54
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Position
8c:complement(302271..304775)
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AA seq
409 aa
AA seq
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MDRNTTEFGLQIISLIVCIAASYLDGGLAAVFNVTGFGAIGDGIHDDTEAFSQAWEAACS
NGGGSSSVIVPAGRTFLLSPVNFEGPCYSSNVHFQVLGKIVAPNETDAWKGCVSNSWLHF
SDIPGLVLEGSGVIDGRGSPWWKNALHIHKCDGLQLRGLHHVNSPKSHISINKCNGVSIS
GLNILAPENSPNTDGIDVSESTHVLISDSIIQTGDDCVAINSGSSDIQMTNVSCGPGHGI
SVGSLGANGSYATVEQVNVTKCNFQGTQNGIRIKTWPGGSGYARNISFEDITLQDVENPI
IIDQFYCKGEFKCEDKPSPSAVQVSHVTYQGVNGSSSSEKAIQLFCSESKGCTDIKMQQI
NITSAIPRAKTYAICKNAYGESSSTSPLVPCLTQLHDDVLGREASAVWV
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atggaccgtaataccacagagtttggtctacaaatcatatccttgatagtttgtatagct
gcatcgtatctagatggtggcctggctgctgtttttaatgttaccggatttggtgccatt
ggagatggaatacatgatgacactgaggctttttcacaagcttgggaagctgcttgttca
aatggtggaggttcaagtagcgtcatagttccagcaggaaggacattcctactgagccca
gtgaattttgaaggcccctgctactcttccaatgtacattttcaggttttgggaaaaatt
gtggcacccaatgaaactgatgcgtggaaaggctgcgtatcaaatagttggcttcacttt
tcagacatacctggtctggtcctggaaggttcgggggtgattgatgggcggggttcaccc
tggtggaaaaatgctctacacatccacaaatgtgacggccttcagttgaggggacttcat
catgtcaacagtcccaaaagccatataagcatcaataagtgtaatggcgtatctatatct
ggactcaacattcttgcacctgaaaacagtccaaatactgatggaattgatgtatctgaa
tccactcatgttttaatttccgactccattattcaaactggggatgactgtgttgcgata
aatagtggcagttctgacatacaaatgacgaacgtttcatgcggacctggacacggaata
agtgttgggagcttgggggcgaatgggtcatatgcaacggtggagcaagtaaatgtaaca
aaatgcaacttccagggaacacagaatggtataagaatcaagacatggccggggggttct
ggatacgccagaaatataagctttgaggatatcacacttcaagacgtggagaaccctata
ataatcgaccagttttattgcaagggtgaatttaaatgtgaagataagccttcaccatca
gctgtgcaagtgagccacgtaacctaccagggagtgaacggatcttcttcgagcgagaaa
gcaattcaattgttctgcagtgagagcaaaggatgcactgacatcaaaatgcaacaaata
aacataacctctgctattccaagagcaaagacatatgccatctgtaaaaatgcctatggg
gagtcctcctcaacttcacctcttgttccctgcttgacgcagcttcatgacgatgtcttg
gggagagaagctagtgcggtttgggtctga
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