Coffea arabica (coffee): 113707045 Help Entry 113707045         CDS       T11342                                  Name (RefSeq) DNA ligase 1-like isoform X1   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism carb  Coffea arabica (coffee) Pathway carb03030   DNA replication carb03410   Base excision repair carb03420   Nucleotide excision repair carb03430   Mismatch repair Brite KEGG Orthology (KO) [BR:carb00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     113707045    03410 Base excision repair     113707045    03420 Nucleotide excision repair     113707045    03430 Mismatch repair     113707045  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:carb03032]     113707045    03400 DNA repair and recombination proteins [BR:carb03400]     113707045 Enzymes [BR:carb01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      113707045     6.5.1.6  DNA ligase (ATP or NAD+)      113707045     6.5.1.7  DNA ligase (ATP, ADP or GTP)      113707045 DNA replication proteins [BR:carb03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     113707045  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      113707045 DNA repair and recombination proteins [BR:carb03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      113707045    NER (nucleotide excision repair)     Other NER factors      113707045    MMR (mismatch excision repair)     Other MMR factors      113707045 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase Motif Other DBs NCBI-GeneID:  113707045 NCBI-ProteinID:  XP_027085001 UniProt:  A0A6P6U4G5 LinkDB All DBs Position 1e:46060187..46069571 Genome browser AA seq 801 aa AA seqDB search MFTAFRSCSSSLYFTHHTLSLHPLRKPLGFKPYFLIYSSFPAKPFSQRSLFLSIPLVNPG SIAAMASRPSAFDLLMSNASKKKSEQKQQKPSPKKRKTTTPTITSQNSAPISVKEPDSAQ IKEAQLEKDMKNDVSSKIKDAQLGKSEEAVVKKPKVVITPDESLLELKDKAASFDPKKAA YWGKGQRVPFMFVAKALDAISKESGRIAITAIVCNMLRTVMETTPEDLVAVVYLLANRIA PAHEGLELGIGDASIIKALSEACGTKEAQIKKQYKELGDLGLVAKASRSSQSLMRKPEAL TVVKVFDTFRLIAKESGKDSQEKKKNHIKALLVAATDCEPQYLIRLLQAKLRIGLAEQTL LAALGHAAVYADKQSSTPANIDSSLEEAAKIVKQVYSVIPVYDKIIPALLADGVWDLPKT CSFSPGVPVGPMLAKPTKGVSEILDKFQDIEFTCEYKYDGERAQIHYMEDGTVEIYSRNA ERNTGKYPDVVDAISRFKRPSVTSFVLDCEIVAFDREKKKILPFQVLSTRARKNVVLSEI KVGVCIYAFDILYINGQPLLQAQLDSRRQHLYESFEEEPGFFQFATAVTSNDLEEIQKFL EAAVDASCEGLIIKTLKKDATYEPSKRSNNWLKLKKDYMDSTGDSLDLVPIAAFHGRGKR TGVYGAFLLACYDVNNEEFQSICKIGTGFSEAVLEERSASLRSKVIPKPKSYYRYSDTIN PDVWFEPIEVWEVKAADLTISPVHRAATGIVDSDKGISLRFPRLLRVREDKNPEDASSAD MVADMYRAQKHNQSNRDDDEQ NT seq 2406 nt NT seq  +upstreamnt  +downstreamnt atgttcaccgcattcaggtcatgctcttcttcactctactttacccaccacactctttcg cttcatcccctcagaaaaccactcggctttaagccctactttctcatctattcttccttc cccgcaaaacccttctctcagagatccctctttctctcgattccattagttaatccagga tcaatagcagcaatggcttctcgcccttctgccttcgacctcctcatgtccaatgccagc aagaaaaagtccgagcagaaacaacaaaaaccatctcccaagaaacgcaaaaccaccacc cccaccatcacttctcaaaattctgctccgatttcagtcaaagaacctgattcagctcaa attaaagaagcccagttggaaaaagatatgaaaaatgacgtttcgagcaagattaaggat gcccagctggggaaaagtgaggaagcggtggttaagaaacctaaggtggtaattactcct gatgagagccttcttgagttgaaggataaggcggcaagttttgatcccaagaaggcggca tattggggaaagggacaaagggtgccgtttatgtttgtagcgaaggcgttggatgctatt tctaaagaatcagggcggattgcgataactgcaattgtttgtaacatgttgaggactgtg atggaaacgacgccagaggatttggtggctgttgtttaccttttggcgaaccggattgct ccagctcatgaaggattggagcttgggattggggatgcttcgattattaaggctctgtcc gaggcgtgcggaacaaaagaagcacaaattaagaagcagtacaaggagcttggtgatcta ggccttgttgcaaaagcaagccgttcgtctcagtctttaatgcgcaaaccagaagcacta actgttgttaaagtttttgatacatttcgccttattgctaaggaatctggtaaggatagt caagagaagaaaaagaatcatatcaaggcactactggttgctgctactgattgtgaacct cagtacttgattcgtctgctccaggcgaaactgcgcattggtttagctgagcaaactctg ttagctgctttgggccatgctgcagtttatgctgataagcaatcttcaactcctgcaaat atagattcttctttagaagaggctgctaaaatcgtgaaacaagtttactcggtaattcca gtctatgataaaataatccctgctcttcttgctgatggtgtatgggatcttcccaagaca tgtagcttttcacctggtgttcctgttggacctatgctagcaaaaccaactaagggagtt tctgaaatattggataagtttcaggatattgaattcacctgtgaatacaagtatgatgga gaacgtgctcagattcactacatggaggatggtacagtggagatatatagtcgaaatgca gaaagaaacactggaaagtatcctgatgttgtggatgcaatttcaaggtttaaaaggccg tctgtaacctcatttgttcttgattgtgaaattgttgcatttgatcgtgagaagaaaaaa attctccccttccaggtcctcagcacacgggctcgtaaaaatgtggtcttgagtgaaata aaggttggtgtttgcatatatgcttttgatatcttgtatatcaatggccaacctcttcta caagcacagcttgacagtcgaaggcagcatctttacgagtcatttgaggaagaacctggc ttttttcaatttgctacagcagtaacatcaaatgatcttgaggaaatacagaagttcctt gaagctgctgttgatgccagttgtgaggggttgataattaagacattgaagaaagatgcc acgtatgagccttccaagcggtcaaataactggctgaagttgaaaaaggattacatggat agtacgggtgactcactggatttggttcccattgctgctttccatggccggggaaaacgt actggtgtttatggagcctttctccttgcttgttatgatgtcaacaacgaagaattccag agcatatgtaaaattggcactggattttctgaagctgtgcttgaagagcgctctgccagc ttgcgctctaaagttattcccaagccaaagtcttattaccggtactcagatacaatcaat ccagatgtatggtttgaacctattgaggtttgggaggtaaaagctgctgatctgactatc agtcctgttcatcgtgctgctactggtattgtggattcagacaagggaatttctcttcgg tttccacgtttactacgggttcgagaagataagaatccagaggatgcctcttctgctgat atggtagcagatatgtatagagctcagaaacacaatcaaagtaaccgcgatgatgatgag caataa

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