Coffea arabica (coffee): 113707052
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Entry
113707052 CDS
T11342
Name
(RefSeq) SNF2 domain-containing protein CLASSY 3
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
carb Coffea arabica (coffee)
Pathway
carb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
113707052
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
carb03400
]
113707052
DNA repair and recombination proteins [BR:
carb03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
113707052
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
Motif
Other DBs
NCBI-GeneID:
113707052
NCBI-ProteinID:
XP_071919247
UniProt:
A0ABM4VI89
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All DBs
Position
8c:complement(1518759..1543639)
Genome browser
AA seq
1044 aa
AA seq
DB search
MEEKRSTVVKRTKAQIKHKLEKKGKGAHGSQEMNATEGKKRDEEMIIISSSSGDEEQEGE
NVHRKLFNRKRKGTAKKIFYDDKSSGSDVRILGEEKVVEEVKLKELDRMRRRRRRRRDTV
YKGKNNDGGSGSDVVLMTEEDIPRNLRCNYVKGRKHFPSRRKRGRSDGNATDERMTMESE
PLGNRAQEGKGLLIKNLDALDSQSSTPEEDTDDSDHTNHWGYCSEDNLEGGIGKDDGFIQ
LPSPKSRKQEPRLGTSRKRCLHVSESESYDSSDQVPKKKKEGSRIPKPSKRRERDVDYMN
ILLGSMLKDDKQTKENPFSFEDNGPTNTLLLKFRFDDEDLTPPEKEDWQKEIDNLFTEME
ICLTLPDSDFTESSNSKDGTHHVTATAKCQAELCLSGKHQLILEEPIGIVCRCCQIVHKE
MKDIFPTLKKETPRRRDWVDLRRGECFGIHELHLDDPGSGNYYTSVDAEGSVLDLIPDHI
RMSMYSHQLDGFVFLWKNIVGETCIEKLKTELSDDGRGAIISHAPGTGKTCLTIVFILSL
LKMYPMCRPVIIAPTSMLLTWDNEFRKWGYRIPFHNFNSKDLSGNELKTDAEFLRRVGSR
MTKLYSWTKEKSVLGISYKLFEQIASGQKGKGSDEKLKEIFLQLPGLVVLDEGHTPRNQQ
SLVWKVLTGVKTKRKIILSGTPFQNNFEELYNTLCLVNPKLSGSMNSESRSRRWQRKSNV
EKERWVSLTNAIDKNSGNAVEELKAMIDPFVHVHKGSILEESLPGLKDTLVILRPTDEQK
GIIQLISDDWSRFDQVHLVSLISVHPSLAAFSKRFSGDKDRLRVLECGPYAGVKTKFAIE
LIRLCDASHEKVIVFSEFIHPLRFIMQQLIDQLKWREGIEVLYMDGKRDEKNRQSSISSL
NDPSGKVKVLFASTKACSEGINLSGASRVVLLDVVWNPAVERQAISRAYRLGQKKFVYVY
HLITSGTLEVEKYAQQANKDRLSELVFSSRDRQRIKSRISSVFEDKILEGMLDNKMLYDI
FENVIHQPKESNVFANFNYVEHRH
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaagagaagcactgtagtgaagaggacaaaagctcaaataaagcacaagttg
gagaagaaagggaagggagcccatggttctcaagaaatgaacgctactgaagggaaaaag
agggatgaagaaatgattataattagcagcagtagcggtgatgaagagcaagagggagaa
aatgtacaccggaagctgttcaatagaaaaaggaaaggaactgctaaaaagattttttat
gatgataagagcagtggaagtgatgttaggattttgggggaagagaaagtggtggaagaa
gtgaaattgaaggaattagataggatgaggaggaggaggaggaggaggagagacactgtt
tacaagggaaagaataatgatggtggaagtggaagcgatgtcgtgcttatgactgaagaa
gatatcccccgaaacttgagatgtaattatgtcaagggtaggaagcattttccatctaga
agaaagaggggtagaagtgatggaaatgcgacagatgaaaggatgaccatggagagtgaa
cctttagggaatcgagctcaggagggaaaaggtcttctaattaagaatcttgatgctctc
gactcacaatcctctacccctgaagaggatactgatgattctgatcatacaaaccattgg
ggttattgtagtgaggataaccttgaaggagggataggaaaagatgatggcttcattcaa
ctaccaagtccaaagtccagaaaacaggaaccaagactcggaacatcaagaaagcgctgc
cttcatgtttctgagagtgaaagttatgattcatcagatcaggtgccaaagaagaaaaag
gaaggcagtagaatacctaaaccctctaagagaagagaaagagacgtggattacatgaat
attcttctggggtccatgctgaaggatgataagcagacaaaggaaaatccattttctttt
gaagacaatggtcctactaatacactgctattaaaattcagatttgatgacgaagatcta
accccaccggagaaagaagactggcaaaaagaaattgataatctttttactgagatggaa
atatgccttacattaccagattctgactttaccgaatcatccaattccaaggatggcact
catcatgtcactgcaacggccaagtgccaagcagaattatgtctctcagggaaacatcaa
ctgattcttgaagaaccaattggaatcgtatgcagatgttgtcaaattgtgcataaggag
atgaaggacatatttcctacactgaaaaaggagactccacgaagacgggattgggttgac
cttcgcagaggtgaatgctttggtattcatgagcttcatcttgatgacccaggctctgga
aactattacacctccgttgatgctgaaggctctgtactggatcttattccagatcacatt
aggatgtcaatgtatagtcatcagctggatggatttgtcttcttgtggaaaaacatagta
ggagaaacctgcatcgagaagctgaaaactgaactttctgatgatggaagaggagccata
atatcacatgcccctggcaccgggaagacctgcttgacaattgtttttattctgtctctg
ttgaaaatgtatccaatgtgccgacccgtgattatagctcctacaagcatgctgctcacc
tgggataatgagttccgaaaatggggatatagaattccttttcataactttaatagcaag
gatttgtcaggaaacgaactcaaaactgatgcagaatttcttcggagagtaggaagccga
atgacaaagctgtactcgtggacaaaggagaaaagtgttctaggaatcagctacaagtta
tttgagcagattgctagtggacagaagggaaaaggaagcgatgaaaaacttaaggaaatc
tttcttcaacttcctggtcttgtggttcttgacgaagggcacacgcctcgcaatcaacag
agtcttgtctggaaggttttgacaggagttaagacaaaaagaaagataatcctctctgga
actccttttcagaataacttcgaggagttgtataatactctttgcctggtaaacccaaag
ctttctggttcaatgaactctgagagtcgcagcagaagatggcagcggaagagcaatgtg
gagaaagagagatgggtttccttgaccaatgccattgataagaactctggcaacgcagta
gaggagcttaaagccatgatagatccctttgtacatgtacacaaaggttctatactagaa
gagagtctccctggtctgaaggacacacttgttattttgcgaccaactgatgagcagaag
ggcattattcagcttatatcggatgattggagcaggtttgaccaagtacatttggtgtca
ctcatttctgtccacccctcattagctgctttcagcaaacgcttctctggcgacaaagac
agactacgggtacttgaatgcggtccttatgctggagtaaagacgaaatttgccattgag
ctcatccgattatgtgatgcatcgcatgagaaggttatagttttcagtgaatttattcac
cctttgagattcataatgcagcagttgatcgatcagttaaagtggagggaaggcatagaa
gtgctgtatatggatggaaaacgtgacgagaagaatcgccagtcatcaattagttctctg
aatgatccctccggtaaggtgaaagttctttttgcgtccacaaaagcttgttctgaagga
ataaatcttagtggggcttcaagagttgttctgttagacgtcgtttggaatcctgcagtt
gaaaggcaagcaataagcagagcatataggcttggccaaaagaagtttgtctatgtttat
catttgataacctctgggaccttggaggttgaaaagtatgctcaacaggctaacaaagat
cgcttgtctgagttggtattttcttctcgagacaggcaaaggatcaagtccagaatctca
tctgttttcgaggacaaaatcttggaaggaatgcttgacaacaaaatgctgtatgatatc
tttgagaatgttattcaccagccaaaggaatcaaatgtatttgcaaacttcaattatgtt
gagcacaggcattag
DBGET
integrated database retrieval system
