Coffea arabica (coffee): 113707225
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Entry
113707225 CDS
T11342
Name
(RefSeq) nuclear pore complex protein NUP85 isoform X1
KO
K14304
nuclear pore complex protein Nup85
Organism
carb Coffea arabica (coffee)
Pathway
carb03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
113707225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113707225
03036 Chromosome and associated proteins [BR:
carb03036
]
113707225
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
113707225
Chromosome and associated proteins [BR:
carb03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
113707225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleopor_Nup85
Motif
Other DBs
NCBI-GeneID:
113707225
NCBI-ProteinID:
XP_027085248
UniProt:
A0A6P6U3S2
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Position
8c:complement(39949639..39958544)
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AA seq
715 aa
AA seq
DB search
MPGMTSDSGDHSTSVVPISPNPQPTTFPLNHGLKPPIARLSISWARGNTLRVTVLRQPQP
SAANGEEEAGGKVLEVKLSDNRDGEIDDAQWRRIAYGSVTPFALLQSRKNSTSTLSKISA
LDSTEWWQYIMDYSREINSLLGNPKTSPSLAIEDQKTVLKDVQKPTCFKAAWELMEIFYA
DQHSQAWIPERLLDWLADYDCLFSGTQPTVHSELVNFQKELVTRQAVEDHPKYWEAISST
LAIGWLEIGVKLLRLHGSYDFDQLGSRETENGLVEAVAVLISKMPRLRADLGADKLGECY
KNKPDFVKAWEKWQAQITKLDCSAFWLQCEHHQTRDGLKNILQTMLGNSTSLSNATFHWM
ELYIAHFLYIRPFTAGLESMYNLAQKCMQIKPVSGHHKLIGLLIGILGENPEVVLAECSK
SFGSWMMAHAAELLTAGNIQAEMLLQKEQFQLGGICIEELNRLVYAQVLSSHALTWQIAP
IYLSSCMKQGMGLLETVLSKQALQHDQVLLKSIEICRLYELGTVSSNLMKITAVHDWKHG
KKGSGVFWLQQARDEVRLNRIAKHLFDFVGKSLSDGSFKQWEGLIELLGPESGIAGGLEF
LNKYREFRRSLQQVHSGTATDAAQRAAEALISLMKNPSTPQRFWLPILYDSLKLFNWAGR
PLLNVSQTNVLLNKLQELSMARLRPDFVNADLPPEALNSVRLAIATNLGRAILEE
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgcccgggatgacatcagattccggagaccactccacttccgtcgtcccgatatcccca
aacccccagcctacaacctttcctctcaaccacggccttaaacccccaatcgctcgactc
tcaatttcatgggcgcgtggaaacacgcttcgcgtcactgttctccgtcaacctcaaccg
tctgctgccaacggcgaggaagaagccggcggtaaagttttggaagtgaagctcagcgac
aacagggacggcgaaattgacgatgctcagtggcggaggatcgcctacggctcggtaact
ccatttgcgctgcttcagagccggaagaattcgacttcgactttgtcgaaaatctcagct
ttggacagtacagaatggtggcaatacattatggattatagtagggagataaattctctc
cttggtaacccaaagacgtctcctagtttagccattgaagatcaaaagacagtgctaaag
gatgtccaaaagccaacatgtttcaaagctgcctgggagctgatggaaatattttatgca
gaccagcactctcaagcttggatccctgaaaggcttcttgattggttggctgattacgat
tgtctattctctggtactcagccaactgtccattcagaacttgtaaactttcaaaaggaa
ctggtcactcggcaggcagttgaagatcaccccaaatattgggaagcaatatcatcaaca
ttggcaattggctggctggaaattggggtgaaattgctgcggttgcatggatcatatgac
tttgatcagctcgggagtcgtgaaactgaaaatggattagtggaagcagtcgctgtgctt
atatcaaagatgccacgtttgcgcgctgatctgggagcagacaaattaggcgaatgttat
aagaacaagcctgattttgtgaaggcttgggagaaatggcaagcacaaataactaagctg
gactgcagtgcattttggcttcaatgtgagcaccaccagacaagggacgggctgaaaaat
atacttcaaaccatgcttggaaactccactagtttgtccaatgcaacatttcattggatg
gagttgtacattgctcattttttgtacatcagacccttcactgctggtttagaaagcatg
tacaacttagctcaaaagtgcatgcagataaaaccagtttctggtcaccataaattgatt
ggacttctaattggaattcttggcgaaaatccagaggttgtcttagcagagtgctcaaaa
tcatttggctcctggatgatggcacatgctgcagaattgttgacagctgggaacattcaa
gctgaaatgcttttgcagaaggaacaatttcaattggggggaatctgcattgaggagctg
aatcgacttgtatatgcccaagtgctatcttctcatgccttgacttggcagatcgctcca
atatatttgtcttcctgtatgaaacaaggaatgggcttgttggagacagtattgagcaag
caagccctacaacatgatcaagtacttctaaagagcatagagatttgccgcctttacgaa
cttggaactgttagttctaacctgatgaagataactgcagtgcatgattggaaacatgga
aagaaaggttcaggagtcttctggcttcagcaagctcgagatgaagtccgtttaaataga
attgcaaagcatttgtttgattttgtcggaaagtcattatctgatggaagtttcaagcaa
tgggaaggacttattgaattgctaggacctgagtcagggattgctgggggactcgagttt
ttgaacaagtacagggaatttaggcgttctcttcagcaggttcacagtggaacagctact
gatgctgctcagagagctgctgaagcccttatatcacttatgaaaaacccctctacacct
cagagattttggctgccaattctatatgattcgttgaaattgtttaactgggcagggcgt
ccattgcttaatgtctcacagactaatgtgttgttgaataaactgcaagagttgtcaatg
gcaagattgcggccagattttgtcaatgctgacttgccacctgaagccttgaactctgtc
agattagctattgccactaatcttggacgtgctattcttgaggagtga
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