Coffea arabica (coffee): 113707433
Help
Entry
113707433 CDS
T11342
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 4
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
carb Coffea arabica (coffee)
Pathway
carb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113707433
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113707433
Enzymes [BR:
carb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
113707433
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113707433
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
113707433
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-GeneID:
113707433
NCBI-ProteinID:
XP_027085566
UniProt:
A0A6P6U5Y8
LinkDB
All DBs
Position
8c:10718838..10727620
Genome browser
AA seq
397 aa
AA seq
DB search
MYSKERMWRATSFFFPRFSSPSFSSSTICLCKMSYKAGPVIPKFIPVETSEITSISKPDG
MRFSLVSYNVLAQAYVKSALFPHSPSSCLKWKARSQATLTVLKNLGADFLCLQEVDEYDS
FYMMNMENLGYSSIYVQRSGQKRDGCAIFYKRTSAELVLEQAIDYNDLISSIEDTAASSG
DKDGVSIPSGNADNELKDDLCKAPGDHGDLNDPRVRLKRDCVGVMAVFKLKVPSCDPIII
ANTHLYWDPELADVKLAQAKYLLSCLAQFKQLVSSQLDCTPSIIVAGDFNSVPGDQVYQY
LVSGSSLPEHLPESSDDQPLPLSSVYAYTREEPHFTNCTPGFTGTLDYTLFSPTGDVKPV
SFLELPESESPDVIGGLPNHYHPSDHLPIGAEFEVLQ
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtattcgaaagaaagaatgtggagagcaacttcctttttcttccctcgcttctcttct
ccttccttctcttccagtacaatttgtttgtgcaaaatgagctacaaagcaggtcctgta
atacccaaatttattcctgttgagacaagtgaaattacatcaataagtaagcctgacggc
atgaggttcagccttgtgtcatataacgttctggctcaggcatacgtgaagagtgctttg
tttccacactctccctcatcttgcctcaaatggaaagctcgatctcaagcaacattgaca
gttctcaagaatcttggagcagattttctttgcttacaggaagtagatgagtatgatagc
ttctacatgatgaatatggagaatcttggctactcaagtatctatgttcaaagaagtgga
caaaagcgtgacggatgtgctatcttctataaacgtaccagtgcagagctggtcttagag
caagcaatagattacaatgatctcataagctctattgaagatacagcagcttcatctggt
gataaagatggtgtttcaataccaagtggaaacgctgataatgaattaaaagatgatttg
tgtaaagctccaggagatcatggtgatcttaatgatcctcgcgttagactgaaacgtgat
tgtgttggtgtcatggcagtctttaaactcaaagttccttcctgtgaccctattatcatt
gccaatacccacctttactgggatccagaattggctgatgtcaagcttgcacaagctaaa
tatctactttcctgcttagctcaatttaagcagctagtttctagccaattggattgcaca
ccttccataatcgtggctggtgacttcaattcagtccctggagatcaggtgtatcagtac
cttgtttctggctcgtctttgcctgagcatctgccagaaagttcggatgatcaacccctt
cctctatctagtgtttatgcctacacaagagaggaaccacactttacaaactgcactcct
gggttcacaggaactctcgattataccttattttctcctactggagatgtaaagccagtc
agtttccttgaacttccagaatcagagtcccctgatgtgataggtggattaccaaatcat
tatcacccaagtgatcatctcccaattggtgctgaatttgaagttctccagtag
DBGET
integrated database retrieval system
