Coffea arabica (coffee): 113707716
Help
Entry
113707716 CDS
T11342
Name
(RefSeq) exosome complex component RRP41-like isoform X1
KO
K12587
exosome complex component MTR3
Organism
carb Coffea arabica (coffee)
Pathway
carb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113707716
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113707716
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
113707716
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
113707716
NCBI-ProteinID:
XP_027107647
UniProt:
A0A6P6VGT6
LinkDB
All DBs
Position
1c:52336104..52341089
Genome browser
AA seq
258 aa
AA seq
DB search
MAGKGAATPATYSPSLTTVKGKKKPPIFADDANWVRSDGRHFHQCRPAFLRTNAVNSASG
SAYAEFGNTKVIVSVFGPRESKKAMMYSDVGRLNCNVSYTTFATVHRNQGSDSKELSSML
YKALEGAIILESFPKTTVDVFALVLESGGSDLPVIISCASLALADAGILLYDLVAAVSVS
CLGKNLVIDPILEEESHQDGSFMISCMPSRNEVTQLTVTGEWSTPKISEAMELCLDACSK
LAKIMRSSLREPLSASEE
NT seq
777 nt
NT seq
+upstream
nt +downstream
nt
atggctggaaaaggtgcagctactccggcgacctactctccatcgctgactacggtcaag
ggcaagaaaaagccccccattttcgctgatgatgccaattgggttcgctctgatggccgt
cacttccaccagtgcaggcctgcatttctacggacaaatgcagtcaattctgcctctgga
tctgcttatgcggagtttggaaacaccaaggtcatagtgtcagtatttgggccaagggag
agtaagaaagcaatgatgtacagcgatgtaggtcggttgaattgtaatgtcagctacaca
acttttgctactgtccaccgcaaccagggatctgatagcaaagaattatcatcaatgctg
tataaagctctggagggtgctataatattggaatcctttcctaagacaactgtagatgtt
tttgctttggttttggaatctggtggcagtgatcttcctgtgattatctcatgtgccagt
cttgctctagcggatgccgggatcttgttgtatgacttggttgccgctgtttctgtgtcc
tgccttggaaaaaaccttgtcattgaccctattttagaagaagaaagccaccaagatggg
agctttatgattagttgcatgccttcacgtaatgaggtcactcaacttactgttacggga
gaatggtcaaccccaaagattagtgaggcaatggagctgtgccttgatgcctgttcaaag
cttgcaaagatcatgcggtcaagtttgagagaacctctatctgcttctgaggaataa
DBGET
integrated database retrieval system
