Coffea arabica (coffee): 113707768
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Entry
113707768 CDS
T11342
Name
(RefSeq) SNF2 domain-containing protein CLASSY 3
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
carb Coffea arabica (coffee)
Pathway
carb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
113707768
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
carb03400
]
113707768
DNA repair and recombination proteins [BR:
carb03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
113707768
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
GTP1_OBG
Motif
Other DBs
NCBI-GeneID:
113707768
NCBI-ProteinID:
XP_027085880
UniProt:
A0A6P6U5A1
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All DBs
Position
9c:complement(20226715..20239295)
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AA seq
1132 aa
AA seq
DB search
MEEKRSTVAKRTRAQTKHQLKEMIDEYYEKKQEKKGKSERAHDSHEMNATEGKKREELES
GIVTRNFEEMVRISSSSNDEEQEGENVNRKMFNRKRKRTVKKIFYDDESSGSDVKILGEE
EVVEEVNWKEFNRMRRRRRRRRRRDTVYKGKNYDGETGSSVKISQEQGKGEEVIANKMNK
RRKTVAKGKNDCDDGDGGSGSDVVFVTEEDVPPNLRCNYVKGRKQFSSRGKRGSSDGNTR
SERVNMESEPLGNGAQDKGKGLLIDNLNTLDSKSSSSEEDADDSDRDYSEEESRSSSTQS
HHWGYCSEDKLEGGIGKDDGFIQLPSPKSRKQEPGLGTLRKCHLHVFDSESFDSSSEDSD
SSDQVPKKKKEGSRITKPSKRRERDVDYMNILLGSMVKDDEQTKENPFGFEDNGPTHTLP
LKFRFDDEDPAPPEKEDWQKEIDDLFTEMEMCLTLPASDFTESSKDGTHHVTATAKCQAE
LCRSGKHQLILEEPIGIICKCCQIVHKEMKEIFPTLKMETPRRRDWVDLRRGDCFGMHEL
HFDDSSFGNYYTSIDAEGSVLDLIPEHIRMSMYSHQLDGFVFLWKNIVGETCIEKLKTEL
SDDGRGAIISHAPGTGKTCLTIVFILSLLKMYPMCRPVIIAPTSMLLTWENEFRKWGHRI
PFHNFNSKDLSGNELKTDAEFLRRVGSRMTKLYSWTKEKSVLGISYKLFEQIASGRKGKG
SGERLGEIFLQLPGFVVLDEGHTPRNQQSLVWKVLTGVKTKRKIILSGTPFQNNFDELYN
TLCLVNPKLSGSVTFESCSRRWQRKSNVEKERWVSLTNAIDKNSDNAVEELKALIDPFVH
VHKGSILEESLPGLKDTLVILRPTDEQKEILQLILDDWSRFDQVHLVSLISVHPSLAAFS
KRFSAHKDRLGVLGCSPYAGVKTKFAIELIRLCDASHEKVLVFSEFIHPLRFIMQQLMDQ
LKWREGIEVLYMDGKCDEKNRQSSISSLNDASSKVKVLFASTKACSEGINLIGASRVVLL
DVVWNPSVERQAISRAYRLGQKKFVYVYHLITSGTLEVEKYAQQANKDRLSELVFSSRVG
QSNKSRISSVFEDKILEGMLDNKMLNDIFENVIHQPKGSNVFANFNYVEHKH
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaagagaagcactgtagcgaagaggacaagggctcaaacaaagcatcaattg
aaggaaatgattgatgaatactatgagaagaagcaggagaagaaagggaaaagtgagaga
gcccatgactctcatgaaatgaacgctactgaggggaaaaagagggaagaattggagtca
ggtatagtcacaagaaatttcgaagaaatggttagaattagcagcagtagcaatgatgaa
gagcaagagggggaaaatgtgaaccggaagatgttcaatagaaagaggaagcgaactgtt
aaaaagatcttctatgatgatgagagtagtggaagtgatgttaagattttgggggaagag
gaagtggtggaagaagtgaactggaaggaatttaataggatgaggaggaggaggaggagg
aggaggaggagagacactgtttacaagggtaagaattatgatggggaaactggaagtagt
gttaagatttcgcaggaacagggaaagggtgaagaagtgattgcaaataaaatgaacaaa
aggaggaaaactgttgctaagggtaagaatgactgtgatgatggtgatgggggaagtgga
agcgatgtcgtgtttgtgactgaagaagatgtccctccaaacttgagatgtaattatgta
aagggtaggaagcagttttcatctagaggaaagaggggtagtagtgatggaaatacaaga
agtgaaagggtgaacatggagagtgaacctttagggaatggagctcaggacaagggaaag
ggtcttctgattgacaatcttaatacactcgactctaaatcctctagctctgaagaggat
gctgatgattctgatagagactatagcgaggaagaatcaaggagctctagtacgcaatca
caccattggggttattgtagtgaggataaacttgaaggagggataggcaaagatgatggc
ttcattcaactcccaagtccaaagtccagaaaacaggaaccgggacttggaacattaaga
aagtgccaccttcatgtttttgacagcgaaagttttgattcttcaagtgaggattctgat
tcatcagatcaggtgccaaagaagaaaaaggaaggtagtaggataactaagccctcgaag
agaagagaaagagatgtggattacatgaatattcttctggggtccatggtgaaggatgat
gagcagacaaaggaaaatccatttggttttgaagacaatggtcctactcatacactgccg
ttaaaattcagatttgatgatgaggatcctgccccacccgagaaagaagactggcagaaa
gaaattgatgatctttttactgagatggaaatgtgcctcacattacctgcttctgacttt
actgaatcatccaaggatggcactcatcatgtcactgcaacggccaagtgccaagcagaa
ttatgtcggtcagggaaacatcagctgattcttgaagaaccaattggaatcatatgcaaa
tgttgtcaaattgtccataaggagatgaaggagatttttcctactctgaaaatggaaact
ccacgaagacgggattgggttgaccttcgcagaggtgattgctttggtatgcatgagctt
cattttgatgactcaagctttggaaactattatacctccattgacgctgaaggctctgtc
ctggatcttattccagaacatattaggatgtcaatgtatagtcatcagctggatggattt
gtcttcttgtggaaaaacatagtaggagaaacctgtattgagaagctgaaaactgaactg
tctgatgatggaagaggagccataatatcacatgcccctggcaccgggaagacctgcctg
acaattgtttttattctgtcattgttgaaaatgtatccaatgtgccgacccgtgattata
gcccctacaagcatgctgcttacctgggaaaatgagttccgaaaatggggacatagaatt
ccttttcataactttaatagcaaggatttgtcgggaaatgaactcaaaactgatgcagaa
tttcttcggagagtaggaagtcgaatgacaaagctctactcgtggacaaaggagaaaagt
gttctaggaatcagctacaagttgtttgagcagattgctagtggacggaagggaaaagga
agtggtgaaaggcttggggaaatctttcttcaactgcctggatttgtggttcttgacgaa
gggcacacacctcgcaatcaacagagtcttgtctggaaggttttgacaggagttaagaca
aaaagaaagataattctctctggaactccttttcagaataactttgacgagttgtataat
accctttgcctggtaaacccaaagctttctggatcagtgacctttgagagttgcagcaga
agatggcagcggaagagcaatgtggagaaagagagatgggtttccttgaccaatgccatt
gacaagaactctgacaatgctgtagaggagctcaaagctctgatagatccctttgtacat
gtacacaaaggttctatactagaagagagtctccctggtctgaaggacacacttgttatt
ttgcggccaactgatgagcagaaggaaattcttcagcttatattggatgattggagcagg
tttgaccaagtacatttggtgtcactcatttctgtccacccctcattagctgctttcagt
aaacgcttctctgcccacaaagacagactaggggtacttggatgcagtccttatgctgga
gtaaagacgaaatttgccattgagctcatccgtttatgtgatgcatcacatgagaaggtt
ttagtattcagtgaatttattcaccctttgagattcataatgcagcagctgatggatcag
ttaaagtggagggaaggcatagaagtgctgtatatggatggaaaatgtgacgagaagaat
cgtcagtcatcaattagttctctgaatgatgcctctagtaaggtgaaagttctttttgca
tccacaaaagcttgttctgaaggaataaatctaattggggcttcaagagttgttttgtta
gatgtcgtttggaatccttcagttgaaaggcaagcaataagcagagcatataggcttggc
caaaagaagtttgtgtatgtttatcatttgataacttctgggaccttggaggttgaaaag
tatgctcaacaagctaacaaagatcgcttgtctgagttggtattttcttctcgagttggg
caaagtaacaagtctagaatctcatctgttttcgaagataaaatcttggaaggaatgctt
gacaacaaaatgctgaatgatatctttgagaatgttattcaccagccaaagggatctaat
gtatttgcaaacttcaattatgttgagcacaagcattag
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