Coffea arabica (coffee): 113707939
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Entry
113707939 CDS
T11342
Name
(RefSeq) chaperonin 60 subunit alpha 2, chloroplastic isoform X1
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
carb Coffea arabica (coffee)
Pathway
carb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113707939
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113707939
03110 Chaperones and folding catalysts [BR:
carb03110
]
113707939
03029 Mitochondrial biogenesis [BR:
carb03029
]
113707939
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
carb04147
]
113707939
Enzymes [BR:
carb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
113707939
Messenger RNA biogenesis [BR:
carb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
113707939
Chaperones and folding catalysts [BR:
carb03110
]
Heat shock proteins
HSP60 / Chaperonin
113707939
Mitochondrial biogenesis [BR:
carb03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
113707939
Exosome [BR:
carb04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
113707939
Exosomal proteins of other body fluids (saliva and urine)
113707939
Exosomal proteins of breast cancer cells
113707939
Exosomal proteins of colorectal cancer cells
113707939
Exosomal proteins of bladder cancer cells
113707939
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
TAL_FSA
Motif
Other DBs
NCBI-GeneID:
113707939
NCBI-ProteinID:
XP_027086149
UniProt:
A0A6P6U6R2
LinkDB
All DBs
Position
9c:37522404..37530376
Genome browser
AA seq
593 aa
AA seq
DB search
MSLLSFSLKPPPFSGITEKPNALGFWRRNKVDNLIMNMNWRKKINRKMMIVRAGPKKINQ
GRECREALLKGINKVADAVSVTIGPRGRNVVLLESDTLKVINDGVTIARAIELSDAIENA
GAMLIQEVATKMNDSAGDGTTTAIILAQEMIKLGLLAASFGANPESLKNGMQKTVKELVK
ILKKKSYPVKGRKDIQAVASISAGNDKYIGDIIAEAIDKIGPDGVISIESSPTFETSVTV
EEGMKIDKGYMSPHFITNVDKSLVEFENAKVMVTDQRISSAREIVSMLEKVTQLSVPLLI
IAEDISKVVLEMLVVNKSQGILNVAVVKCPGFGEGKKALLQDISLMTGADFLSGDLGLTL
EGATSDQLGIARKVSITSNSTTIVADPSTKAEIQARIMEIKKNLAETDSKYLSQKLSERI
AKLCGGVAVIKVGAHTEVELEDRKLRIEDAKNATFAAMDEGIVPGGGAAFIHLSKEVPII
KEQFQEPDEQLGAEIIQMALLAPANYIAANAGVDGAVVVEKIRACDWQIGYNALTGQYED
LLRAGVVDPCKISRYALQNAVSVAGLVLSTQAILVEKTKKPKPLVPDIPGISP
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgtccctcttatccttcagtctgaagcctcctcctttctctggaataactgaaaagcca
aatgcacttgggttttggagaagaaacaaagttgataatctcatcatgaacatgaattgg
aggaaaaagatcaatagaaaaatgatgatagtcagagcagggcctaagaaaatcaaccaa
ggtagggagtgcagagaggccttactgaaaggaatcaataaggttgctgacgctgtttca
gttaccataggacccagagggcgcaatgttgttcttttggaatctgacacgcttaaagta
ataaatgatggtgtaacaatagcccgtgcaattgagctttctgatgcaattgagaatgct
ggagcgatgctgatccaagaggttgcaactaagatgaatgattcagctggggatggtaca
acaactgcaattattttggctcaagaaatgatcaagctagggttgttagctgcttctttt
ggggcaaaccctgaatctttaaagaatgggatgcagaagacagtaaaagaattagttaag
atccttaagaagaaaagctatcctgtaaaaggaaggaaagatatacaagctgttgcatct
atatctgctggaaatgataaatatattggcgatattattgctgaagctattgataagatt
ggtcctgatggagtaatatccattgaatcttccccaacattcgaaacctctgttacagtt
gaagaaggaatgaagattgacaaggggtacatgtctcctcatttcattacaaatgtggat
aaatctctagtcgagtttgaaaatgctaaagttatggttaccgatcaaaggatatcaagt
gcacgggagattgtgtctatgctggaaaaagtaacccagttgagtgtgccactgttgata
attgcggaagatatttcaaaggtggtgctggaaatgctagttgtgaataaaagtcaaggc
atactgaatgttgctgttgttaagtgcccaggatttggagaagggaagaaagctctattg
caagatatctcccttatgacaggtgctgattttctttctggagatttgggtctcactctt
gaaggtgcaacctctgatcagcttgggattgcacgaaaagtaagcataacaagtaattcg
accaccattgttgctgatccttctactaaagccgaaatacaagcaagaattatggagata
aagaagaatcttgctgagacagatagtaaatacctgtcccaaaagctttctgaaagaatt
gcgaaactctgtggaggtgtggctgtaatcaaggttggagctcacactgaggtggaactt
gaagatcgtaagctaagaattgaggatgcaaagaacgccacatttgctgctatggatgaa
ggcattgtgcctggtggaggagctgcattcatacacctctccaaagaagtaccaataatt
aaggaacagtttcaagaaccagatgaacagcttggtgctgagattatacaaatggcactt
cttgctcctgcaaactacattgcagccaatgcaggtgttgatggagctgtagttgtggag
aaaattcgagcctgtgactggcaaattggatataacgcattgacgggacaatatgaagac
cttcttagggctggagttgttgatccttgtaaaatctcaaggtatgcacttcagaatgct
gtctctgttgctggtttagtcctaagtacccaagctatactggttgagaaaacaaagaaa
ccgaagccgcttgttcccgatattcctggtatatcaccatga
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