Coffea arabica (coffee): 113708279
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Entry
113708279 CDS
T11342
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog
KO
K10683
BRCA1-associated RING domain protein 1
Organism
carb Coffea arabica (coffee)
Pathway
carb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
113708279
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113708279
04121 Ubiquitin system [BR:
carb04121
]
113708279
03036 Chromosome and associated proteins [BR:
carb03036
]
113708279
03400 DNA repair and recombination proteins [BR:
carb03400
]
113708279
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
113708279
Ubiquitin system [BR:
carb04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
113708279
Chromosome and associated proteins [BR:
carb03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
113708279
DNA repair and recombination proteins [BR:
carb03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
113708279
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-HC5HC2H
BRCT_2
zf-C3HC4_2
zf-HC5HC2H_2
zf-RING_2
zf-C3HC4
zf-C3HC4_3
zf-C3HC4_4
zf-RING_6
RTT107_BRCT_5
zf-RING_UBOX
zf-RING_10
PHD_NSD
zf-RING_5
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
113708279
NCBI-ProteinID:
XP_071920408
UniProt:
A0ABM4VLK1
LinkDB
All DBs
Position
9c:31479934..31488144
Genome browser
AA seq
991 aa
AA seq
DB search
MAADTSHLEKMGRELKCPICLSLLNSAVSLSCNHVFCNCCIEKSMKSASDCPVCKVPFRR
REIRPAPHMDNLVSIYKSMEVASGVNIFVTQTAPTTRISGHESHSDGDTIGDIQENINTC
IGTSAEENQKICKRKGSKRSTQAKCPLKPSFPKKKRVHVPQSPPSETPIRLEKLVNETAE
ISKNEPESSFLMKEKHVSKKKGEPLFTPFFWLRDEEDPENPTQQTDEDQIMDTPPDAPCF
SDIKDSDDEVPNEMPPDGEKCIAYSDVDLFDSEMFEWTQRGCSPELQSSPVPMQAEECGE
DIIEPATHITTTIVDSKVQNREVRISETDKEDLGLPCLSVEIPMDKIASKAAGMSRKRIK
KSVEYSQSKRAKMITNKARRAHKESERRPGKSMPEEQFGNNDNVFNLPRKTSKRNRKVSF
DANVAEAAGNTSTSSGGTNPLFKGKNKVMIGLPDLLGHKRQKRGSKRVKIGKMKDSLKLE
KHSPDLRAKKPEELDERLTLKQCGGLISHSGQKVSPEEGALGVDRVLRRCGDNHQMARCF
EGNKSGNTLTDLYQNGDGEVAAEIFPSVGADQEKPTSRGTQNPVGVHPQGASSPNKIQCA
FCQSAEDSEASGVMVHYLKGKPISGDEIGGPNVIHSHKYCTEWAPNVFFQDDNAINLEAE
LARSRKIKCGLCGMRGAALGCFQKSCRKSFHVTCAKMTPNFRWDYDNFVALCPLHASCKM
PCEATGSESHTKRKSAPKGDYHIQQAQVVKDDVKEHLQWKCDKKAKNLILCCSGLTSAEK
DIVSQFQQLSGVIALKNWDLSVTHIVASTDENGVCKRTLKFMMGVLEGKWIVNIEWVKAC
IKLMELVDEQLYEIKVDSHGIRDGPSRGRSRLLDKKPKLFSGYKFFFLGEFVPSYKGYLH
DLVIAAGGTVLNRKPISEEQKIFSSECPPSTTFIVYSLEQPEKCGASKRNTILYRRRFDA
EALASSTRAVAVSNSWILNSIAGCKLQNLPE
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggacacttctcatctggagaaaatgggtagagaactcaaatgccccatctgc
ttgagtctgttgaattctgctgtctcgctctcatgcaatcatgtattctgcaattgctgc
attgagaaatctatgaaatcagcatcagattgtccagtatgtaaagtaccatttcgccgt
agagaaattcgtcctgctcctcatatggacaacctggtcagcatttacaagagcatggaa
gtagcttcaggagtcaatattttcgtcacacagacagcccctacaactagaatatcaggg
catgagagccattctgatggtgatacaattggtgatattcaagaaaatattaatacttgc
attgggacttcagcagaggagaaccagaaaatatgcaaaagaaaggggtctaaaagatca
acacaagctaaatgtcctttgaagccttcctttccaaaaaagaaaagggttcatgttcca
caaagtccaccttctgaaacccctattaggcttgaaaaattggtaaatgaaactgctgaa
atcagcaaaaatgaacctgagagctctttcctgatgaaggaaaagcatgtgtccaagaaa
aaaggagagcctttatttactccattcttctggctgagagatgaagaggatcctgagaat
cctactcagcaaacagatgaagatcagatcatggatacaccacctgatgctccttgcttc
agtgatattaaggattctgatgatgaagtccctaatgaaatgcctccagatggggaaaaa
tgtattgcatacagtgacgtggacttgtttgatagtgaaatgtttgaatggacacaaaga
ggatgttctccagaacttcagtcaagccctgttccaatgcaggctgaggaatgtggagaa
gacataatagagcctgccacacatattacaactacaattgtggattctaaagttcagaac
agagaagtcaggataagtgaaactgacaaggaagatttgggtttaccatgtctgtcagtt
gaaattcccatggataaaattgctagcaaagcagctgggatgtctagaaagagaattaag
aagtcagtggaatacagccaaagtaagcgagccaagatgattacaaataaggcacgtaga
gctcataaagaatcagaacgaaggcctggaaaaagcatgccagaggagcagtttggcaat
aatgataatgtattcaatttaccaaggaaaacatctaaacggaacagaaaggtttccttt
gatgctaatgttgcagaggcagcaggaaatacatctacttcatctggtgggacaaatcct
ttgttcaagggtaaaaacaaagtaatgattggtcttccagatttattaggtcacaagagg
cagaaaagaggaagtaaacgtgtgaaaattggcaaaatgaaggatagtcttaaactagag
aaacatagccctgatttaagagccaaaaagccagaagagttggatgagaggttgactctg
aagcaatgtgggggtttgatttctcattcaggtcaaaaagtatctcctgaggagggagct
ttaggtgtggatagggtgcttagaagatgtggggataaccatcaaatggcaagatgtttc
gaaggaaataaatctggaaatactctgactgatctgtatcagaatggtgatggagaggtt
gctgcagaaatttttccaagcgtaggagcagatcaggagaaacctaccagcagagggaca
caaaacccagtaggtgttcacccgcagggtgcgtccagtcccaacaaaattcagtgtgca
ttctgtcaatctgctgaagactctgaggcttcaggtgtcatggttcattacctcaaaggc
aagcccatttcaggtgacgagattggaggaccaaatgtcatacattctcacaagtattgc
acagaatgggctcctaatgtattttttcaagatgataatgcaattaaccttgaagctgag
ttggcaagaagtcgaaagataaagtgtggtttatgtggaatgcgaggggcagctcttggg
tgtttccagaagagttgccgcaagagctttcatgttacatgtgcaaagatgaccccaaac
tttcgatgggattatgataactttgtagcattatgtccccttcatgccagttgtaaaatg
ccatgtgaagcaactggatctgaatcccacacaaagaggaaatctgctcccaaaggggat
tatcatatccaacaggcacaagtggttaaggatgatgttaaagaacatctgcagtggaaa
tgtgacaaaaaggccaaaaacttgattctctgctgttcaggcctcactagtgctgagaag
gatattgtttcccaatttcagcagttgtctggagttatagcattgaagaattgggatcta
agtgtgacccacattgttgcatctactgatgagaatggggtttgcaaaagaaccctcaaa
tttatgatgggtgtcttggaggggaaatggattgtgaacattgaatgggttaaggcctgc
attaagttaatggaacttgttgatgagcagctttatgaaatcaaggttgatagccatgga
atcagggatggtccaagccgtggaagatcaagacttctggacaagaagccaaagctcttc
agtgggtacaaattcttttttctgggcgaatttgttccttcatacaaggggtatcttcat
gatctggttattgctgctggaggaactgtactaaacagaaagcctatttctgaagagcag
aaaatcttttcatcggagtgccctccttcaactactttcattgtttatagccttgagcaa
ccggagaaatgtggggcaagcaagagaaacacaatactgtaccgtagacgttttgatgca
gaggctttagctagttccacaagagctgttgcagtaagcaattcatggattttgaactca
attgctggctgcaaattgcaaaaccttccggaatga
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