Coffea arabica (coffee): 113708313
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Entry
113708313 CDS
T11342
Name
(RefSeq) WD repeat-containing protein LWD1-like
KO
K11805
DDB1- and CUL4-associated factor 7
Organism
carb Coffea arabica (coffee)
Pathway
carb03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
113708313
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
carb04121
]
113708313
03036 Chromosome and associated proteins [BR:
carb03036
]
113708313
Ubiquitin system [BR:
carb04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
113708313
Chromosome and associated proteins [BR:
carb03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.3/1.5)
113708313
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
Beta-prop_THOC3
Beta-prop_WDR5
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_WDR3_1st
WD40
WD40_WDHD1_1st
WD40_Gbeta
Beta-prop_Aladin
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR3_2nd
Beta-prop_WDR41
Beta-prop_WDR36-Utp21_2nd
MIOS_WD40
Motif
Other DBs
NCBI-GeneID:
113708313
NCBI-ProteinID:
XP_071921284
UniProt:
A0ABM4VP14
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All DBs
Position
9c:22565813..22566583
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AA seq
233 aa
AA seq
DB search
MERYPDRLEIFQLNNNRNSELFDPLTSFDWNEAKPKRIGASSNDTTCTIWDIDRETVDTQ
LIAHDKEVYDIAWGGVGVFASISTDGSVWVFDLRDKEHSIIIYESSEPDTPLVRFGWNEQ
DPRYMVTIDMDSAKVVVLDIRFPTFPVVELQRHQASVNAIAWTPHSSCHICTANDDSQAI
IWDLSSMGQPIEGGLDPILAYTAGAEIEQPQWSSSQPDWVAIAFSNKLQILRV
NT seq
702 nt
NT seq
+upstream
nt +downstream
nt
atggagcggtatcccgaccgtctggaaatcttccagctcaacaacaaccgcaacagcgag
ctcttcgaccccctcacctccttcgactggaacgaggccaagcccaagcgcatcggcgcc
tctagcaacgacaccacctgcaccatctgggacatcgaccgcgagaccgtcgacacccag
ctcatcgcccacgacaaggaggtctatgacatcgcttggggcggcgtcggcgtctttgcc
tccatttccactgacggctccgtttgggttttcgacctccgcgacaaggagcactccatc
attatctacgagagctccgagcctgatacgccgctcgtccgctttggttggaacgaacag
gacccccggtacatggttactatcgatatggacagcgctaaggtagtcgtcctggacatc
cgcttccccacgtttccggtcgtggagctgcaacggcaccaggccagtgtcaacgccatc
gcttggactccccacagctcgtgccacatctgcactgctaacgatgactcccaggccatc
atttgggatctctcttccatgggccagcctattgagggcggattggaccccattctcgct
tatactgccggtgccgaaattgagcagccacagtggtcctcttcccagcctgattgggtt
gccatcgccttctcgaataagcttcagattctgagggtatga
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