Coffea arabica (coffee): 113708608
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Entry
113708608 CDS
T11342
Name
(RefSeq) uncharacterized protein
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
carb Coffea arabica (coffee)
Pathway
carb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113708608
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
carb03000
]
113708608
03019 Messenger RNA biogenesis [BR:
carb03019
]
113708608
04121 Ubiquitin system [BR:
carb04121
]
113708608
Enzymes [BR:
carb01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
113708608
Transcription factors [BR:
carb03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
113708608
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113708608
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
113708608
Ubiquitin system [BR:
carb04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
113708608
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
113708608
NCBI-ProteinID:
XP_027086944
UniProt:
A0A6P6U9N8
LinkDB
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Position
1e:47558720..47567614
Genome browser
AA seq
1009 aa
AA seq
DB search
MSDEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDTEGRCPACRTPY
NKEKIVGMAANCERLVAEMNMEKKFKTQKGKTKNSEGRKQLSSVRVIQRNLVYIVGLPLN
LADEELLQRKEYFGQYGKVMKVSISRTAAGTIQHFANNTCSVYITYSKEDEAVRCIQSVH
GFILEGRSLRACFGTTKYCHAWLRNVPCSNPDCLYLHEIGSQEDSFTKDEIISAFTRSRV
QQITGATNSLQRRSGNVLPPPADDYCNNISASSGKPISKTSTNNISSSTKSSPPNSSSGR
SVALPAGASWGTRALNNQLTSILPSSNGPQKQKSDACNGPVTFSTALASSNHIPLSHAEV
GKKLPAEENNKTQLESKQMLEPLKQNLGSDSPTTMSDVPSRSSNPTTATTSSKLYGLPAS
KDKDKHVILSPKVINSDDTSSESSGSGSVKDLKDDIDEKVKTLSSDMLSLAIDDKCRGVE
QIYLEPREPLTSQTTGNAVESNGDSYLQRNKYSETPGVQVASHEEKDDLLSFEDQRLKDP
EVISDASYLPNSSHSLLSSLNHRGCSPLKSGPFNGDGDLHVVDNKVDSVLQLSGTPVLSS
GYPENQFNSFASLANNVEHSYFFTNAEKSKHIGRYDSEVLSASHNVALDMGESSIISNIL
SLDFDSWDESSLTSPQNLAKFLGEIDGQEGSHGVVSPWKVQQSNQSRFSFAREEDPMNHA
ADGESSLGYIGQAFRPQYSGHDFVNKASIHLDKVGTRNGMSLVNAEEPDIFARSHSLITS
SKLPVSRSQASAPPGFSTPSRAPPPGFMSHERIDQTCTSFSGHPMLDTSALRNQYQPMQP
GNVMSNGDIEFMDPAILAVGKGRLPDSLSSSGLDMRSSFSPQLNTLEDNTRIQLLMQRSL
SAHQNHRLDDMGDAFSFADSFRSPSRLMEQSMVNNISPYSQVSLLQSRNPLMSNGHWDGW
NDVQSANNLGMAELLRPERLGFNKFYTGYEDSKLRMPSQGDLYNRTYGI
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgaaggagaaaggacctgtcctctctgtgctgaggaaatggatttgacagat
cagcaactcaagccttgcaagtgtggttatgagatctgtgtctggtgctggcatcatata
atggacatggctgagaaggatgacacagaaggtcggtgtccagcatgtcgtactccttat
aataaggaaaagattgttgggatggcagcaaattgtgaaaggttggtggctgagatgaat
atggagaaaaaattcaaaacacaaaaggggaaaactaaaaattctgaaggaaggaagcaa
cttagcagtgtgcgagttatccaaaggaaccttgtctatattgtgggattgcctcttaat
ttagcagatgaggaacttctccagcggaaagaatattttggtcagtatggcaaggttatg
aaagtgtctatctctcgtacagcagctggtaccattcaacattttgcaaataatacctgc
agtgtatatattacatattcaaaagaagatgaagcagttcgctgtattcagtcagtacat
ggttttatattggagggcagatctttaagggcttgttttggaaccacaaaatattgtcat
gcgtggctgcgaaatgtgccttgcagcaaccctgactgtctatacttgcatgaaattggt
tcacaagaggacagtttcacaaaagatgaaataatatcagcttttacaaggagtagagtt
caacaaattacgggtgctacaaatagtttgcaacggcgctcgggaaatgtcttaccacca
ccggcagatgattactgcaataacatttctgcttcctcgggcaaaccaattagtaaaact
tctacaaataatataagtagcagtacaaaaagttcaccaccgaatagtagttctgggaga
tctgttgctcttccggctggagcctcatggggaacacgtgctttgaacaatcagctgaca
tctattttaccatcttccaatggaccacaaaagcaaaaatctgacgcttgtaatgggcca
gttacgttctctacagctcttgcaagctcaaatcacattcctctgtcccatgctgaggtt
gggaagaagcttcctgctgaagagaataataaaactcaactggaaagcaagcagatgttg
gagcctcttaaacagaatttaggttcagattctccaactaccatgtctgatgtcccaagc
cgatctagtaatcctactactgcaactacgagcagcaaactatatggcttacctgcatct
aaagataaagataaacatgtcattttgtctcctaaagtcattaactctgacgacacctcc
tcagaatcctctggatctggttcagtgaaagatttaaaagacgatatagatgaaaaagtt
aagactttatccagtgatatgttgtcattggccattgatgataaatgtcgtggggtagaa
caaatctacctagaaccaagagaacctttgacttctcagacaactgggaatgcagtggaa
tctaacggtgatagttatcttcaaaggaataaatattccgaaactccaggagtgcaagtt
gcctcgcatgaagaaaaagatgacttgctatcttttgaagaccagagactgaaggatcct
gaagttatcagtgatgctagttacttaccaaatagttctcattctttactttcatcgcta
aaccatagaggttgttctcctctgaagagtggtcctttcaatggtgatggtgatcttcat
gttgtagataacaaagttgattccgtattgcagttgtctggtactccagttttgtctagc
gggtaccctgagaatcagttcaacagttttgcgtctttggccaataatgttgaacattct
tatttttttactaatgctgagaaatctaagcatattgggagatatgatagtgaagttttg
agtgccagccacaatgttgctttagatatgggggagagcagcataatatcaaatatttta
tcgttggactttgattcttgggatgaatcatcattaacttcacctcagaatttggccaag
tttttgggtgaaattgatggacaagaaggctcccatggagttgtgagcccctggaaagta
cagcaaagcaatcagtcgaggttctcctttgcaagagaggaggatcctatgaatcatgcc
gctgatggtgaatcatctcttggatatattggtcaagcttttaggcctcaatattccggc
catgactttgtgaataaagcaagcatccatttagataaggttggcactcgaaatggtatg
tcattggtaaatgctgaggaacctgatatttttgcccgcagtcattctcttatcacttct
agcaagcttccagtttcaagatctcaggcatcagcgcctccaggcttttcaacaccaagc
agagcaccacccccaggttttatgtctcatgagagaatcgatcagacttgcacctcattt
tccgggcaccctatgcttgacacctctgcactcagaaatcagtatcagccaatgcagcct
ggaaatgttatgagcaatggggatattgagtttatggatcctgcaattttagctgttggt
aaagggaggcttccagacagccttagtagctctggcttagacatgagatcaagtttttct
cctcaattgaatacccttgaagataatacaaggattcagttgttgatgcaaaggtctctt
tccgctcatcagaatcatagacttgatgatatgggagatgccttttcttttgctgattca
tttagaagtccttcaaggttaatggagcaatcgatggtgaataacatatctccatattca
caagtcagtcttctacagtctagaaatcctttgatgtcaaatggccactgggatggttgg
aatgatgttcagagtgcaaataatttgggaatggctgaactccttagacccgaaaggttg
ggatttaataaattctacactgggtacgaggattccaagttacgcatgcccagccaaggt
gatttatacaacagaacatatggaatttag
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