Coffea arabica (coffee): 113708646
Help
Entry
113708646 CDS
T11342
Name
(RefSeq) transcription initiation factor IIF subunit alpha-like isoform X1
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
carb Coffea arabica (coffee)
Pathway
carb03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
113708646
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
carb03021
]
113708646
Transcription machinery [BR:
carb03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
113708646
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TFIIF_alpha
WHD_SOWAH
zf-C3HC4_3
DZR_2
Zn_Ribbon_1
WHD_Rad26_CSB
DZR
Motif
Other DBs
NCBI-GeneID:
113708646
NCBI-ProteinID:
XP_027086993
UniProt:
A0A6P6U8W1
LinkDB
All DBs
Position
9c:complement(42544685..42551440)
Genome browser
AA seq
535 aa
AA seq
DB search
MSIDLILKPSCSGCGSTAELYGSTCKHLTLCVTCGKTMAENRAKCYECGTPITRLIREYN
VRACSSNDKNYFIGRFITGLPNFSKKKSENKWSLQKEGLMGRQVTDTLREKYKNKPWLLE
DETGTQYHGQLEGAQSATYYLLMLQGREFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKN
RRKTADGYQRWMMKAANNGPAAFGEVEKIDDKEAGAGGGRGRKKAGGDDEEANASDRGEE
DEEEEAARKNRLGLNQKGGDDDEEGPRGGDLDLDDDDIEKGDDWEHEEIFTDDDETCYTE
EREELAPEIPAPPEIKQDDEDEEEGDEEEGGGLSKSGKELKKLLGRANGLNDSDAEDEDD
DDDDMEDDISPVLAPKQKETLKEEPTENISPLKSAAPGPSRGTPPTSKSAKGKRKSNGEE
VKAANGTPLKKVKSENEAKPVKSENTSGSKNTVTPKAVSQQPSSKTGSTPSGPVTEDEIR
AVLLQKGPVTTQDLVAKFKSRLKTKEDKDAFAAILRRISKIQKTSGSNYVVLRDR
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatagatttgatactgaagccgtcgtgcagcggctgcgggtccacggcggagctg
tacggcagcacgtgcaagcacttgaccttgtgcgttacctgtgggaagaccatggctgag
aatcgcgctaagtgctacgagtgcggaacccccatcactcgcttgatccgcgaatataac
gtacgagcttgttctagtaatgacaaaaactacttcatcggcagattcattactggttta
ccaaacttttccaagaagaaaagtgagaataagtggtctttgcagaaagaaggcttgatg
gggcgccaagttactgataccttgcgggagaagtacaagaataagccttggctgctggaa
gatgaaacggggactcagtaccacggtcaacttgagggtgcacaatcagccacctattat
ctcctgatgcttcaaggaagagaatttgttgccattcctgcgggttcatggtacaatttc
aacaaagttgcacaatataaacaacttactcttgaagaagcagaagagaagatgaaaaat
agaaggaaaactgcagatgggtatcagcggtggatgatgaaagcagcaaataatggacca
gccgcatttggtgaagttgaaaaaattgatgacaaggaagctggagctggcggtggaagg
ggacgcaagaaagcggggggtgatgatgaagaggccaatgcatcagataggggtgaggaa
gatgaagaggaagaggctgcaagaaaaaataggctgggtctcaatcaaaaaggtggtgat
gatgatgaagaaggtccaagaggaggtgatcttgatcttgatgatgatgatattgaaaaa
ggtgatgattgggagcatgaagaaatctttaccgatgatgatgaaacttgttatacagag
gaacgtgaagaattggcccctgaaattcctgctcctcctgaaattaagcaggatgatgag
gatgaggaagaaggtgatgaagaggaggggggagggctaagcaaatctggaaaggagttg
aagaaattgcttggccgagctaatgggctgaatgactcagatgcagaagacgaagatgat
gatgatgacgatatggaagatgatatttctcctgtgttagcaccaaaacaaaaggaaact
cttaaagaagaaccaactgagaacatcagtccactaaaatcagctgctcctggaccttct
cggggaactcctcctacttcaaagtcggcaaaggggaaaagaaaaagtaatggtgaagaa
gtgaaagcggcaaatgggacacctcttaaaaaagtcaaatccgaaaatgaagcaaagcct
gttaaaagtgaaaatacttctggctcgaagaatactgtgactccaaaagctgtatcgcaa
cagccatcttcaaaaacagggtcaactccttctggtccagtcactgaagatgagattagg
gctgttttattgcagaaggggccagtgactactcaggatcttgttgccaaatttaaatct
agactcaaaacgaaagaggacaaggatgccttcgcagctatattaaggaggatttccaag
atacagaagacaagcgggtcaaactatgtagtgctgagggataggtga
DBGET
integrated database retrieval system
