Coffea arabica (coffee): 113708686
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Entry
113708686 CDS
T11342
Name
(RefSeq) regulator of nonsense transcripts UPF2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
carb Coffea arabica (coffee)
Pathway
carb03013
Nucleocytoplasmic transport
carb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
113708686
03015 mRNA surveillance pathway
113708686
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113708686
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
113708686
mRNA cycle factors
P-body specific factors
113708686
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
113708686
NCBI-ProteinID:
XP_027087053
UniProt:
A0A6P6U923
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Position
9c:complement(41060676..41073868)
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AA seq
1199 aa
AA seq
DB search
MEHPEDEPRSGGEHHEKHDDEHLVQEAVARSEEFKKSVEAKMALRQSNMNPERPDSGFLR
TLDSSIKRNTAVIKKLKQINEEQREGLMEDLRSVNLSKFVSEAVAAICDAKLRSADIQAA
VQICSLLHQRYKDFSPSLVQGLMKTFFPGKSGEDPEADRNLKAMKKRSTLKLLLELYFVG
VIDDSGIFVNIIKDLTSLEHFKDRDATQTNLSLLASFARQGRYLLGLPQTGQDVLEEFFK
SLNVMAEQKRFFRKAFQTYYDAAVELLQSEHVSLRQMEHENAKIINAKGELSDENASSYE
KLRKSYDNLYRGISALAESLDMQPPVMPEDGHTTRMSSGEDLSSQSAGKDSPVLEALWDD
EDTKAFYECLPDLRAFVPAVLLGEAEPKLNEQSPKTQDQSTDLAAEADQCQITRELADVS
LDSGSSQEDKGEKVKDKDERDKEKSKEIEKDKGKEKDAERKGESDKEKVKGLEGTSLDAL
LQRLPGCVSRDLIDQLTVEFCYLNSKSNRKKLVRALFNVPRTSLELLPYYSRMVATLSTC
MKDVSSMLLQLLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFKIAPAGLVFSCLKACL
DDFSHHNIDVACNLLETCGRFLYRSPETTLRMANMLEILMRLKNVKNLDPRHSTLVENAY
YLCKPPERSARVSKVRPPLHQYIRKLLFSDLDKSSIERVLRQLRKLPWSECDPYLLKCFM
KVHKGKFGQIHLIASLTAGLSRYHDDFAVAVVDEVLEEIRLGLELNDYGMQQRRIADMRF
LGELYNYELVDSSVIFDTLYLILVFGHGTAEQDTLDPPEDCFRIRMVITLLETCGHYFDR
GSSKRKLDRFLIHFQRYILCKGALPLDIEFDLQDLFAELRPNMTRYSSVEEVNAALVELE
EHERVVATEKANIDKHSETGKSPSRTSSGVISVNGQSIANGSEENGELHDDIVGETDSDS
GSGTPERMGHHDEEDSDEGNHDEESETDEDYDDLVGPASDEEDEVHVRQIAAQVDPQEAA
EFDRELRAIMQESLDSRKLELRARPTLNMMIPMNVFEGPTKDHLGKSTEGESGDEAIDEA
AGGYKEVQVKVLVKRGNKQQTKQMSIPRDCTLVQSTKQKEAAELEEKQDIKRLVLEYNDR
EEEELNGLGMQPLSWTQSAGSRVGNRGHAWEGHGRTTGSRGRHHYIHHSGGGMHYSRRR
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
atggaacaccctgaggatgaacctcgttctggaggtgaacaccatgaaaaacatgatgat
gagcatctggttcaggaagccgttgctcgttctgaggaatttaagaagtctgtagaagct
aaaatggcacttcgtcagagtaacatgaaccctgaaagacctgactcaggttttcttaga
acattggattccagcattaaacgcaacacagctgttattaaaaaacttaagcaaattaat
gaagagcagcgagaaggattgatggaagatttgcggagtgttaacttaagcaaatttgtc
agtgaagcagtggcagctatttgtgatgcaaaacttagatctgcagacattcaagctgct
gttcagatctgttctttgcttcatcagagatacaaagacttctcaccaagtctggttcaa
ggtctcatgaaaaccttttttcctggtaaatctggtgaagacccagaggcagacaggaat
ttgaaggccatgaagaaacgtagtactttaaaacttctactggagctttactttgtcgga
gtcatagatgatagtggcatctttgttaacattattaaggatctcactagcctagagcat
tttaaggaccgtgatgcaacacagacaaatctgtcccttcttgctagttttgctcgacaa
ggaaggtatctccttgggcttccacagactggacaagatgttcttgaagagttttttaag
agcctcaatgtgatggcagaacagaaaaggttctttaggaaggcatttcaaacatattat
gatgctgctgttgaactacttcaatcagagcatgtgtcacttcgccaaatggagcatgag
aatgcaaagatcataaatgctaaaggtgaacttagtgacgaaaatgcctcttcatacgaa
aaactgcgaaaatcatatgacaatctataccgtggcatctctgctttagcagaatcattg
gatatgcaacctcctgtgatgcctgaggatggtcatacaactaggatgagttcaggggag
gatttgtcatctcaaagtgctggtaaagatagtcctgtccttgaagctctctgggacgat
gaagatacaaaggctttctatgagtgcttaccagatctcagagcatttgttccagctgta
ttgttgggagaagcagaaccaaaattgaatgagcaatctcctaagacgcaagaccaatca
actgatttggctgctgaagctgaccaatgtcagataacgcgagaactggcagatgtttct
ttggattctggatcttcccaggaagacaaaggtgagaaagtgaaggataaagatgaaagg
gataaagaaaagagtaaagaaattgaaaaagataaaggaaaagaaaaggatgctgagaga
aaaggagaaagcgacaaggagaaagttaaaggtcttgaagggacaagtctggatgcgctg
ctgcagagactccctggttgtgtgagccgtgacttgattgaccagttgactgtggaattt
tgctatttaaattcgaagtctaataggaaaaagcttgtcagggctttgttcaatgtgccc
aggacatcactagagttgttgccatattattctcgcatggttgccaccctgtcaacatgt
atgaaggatgtgtcttctatgcttttacagttgttggaggaagaattcaactttttgatc
aataagaaggatcaaatgaacattgaaactaaaatccggaatatccgttttattggagaa
ctctgcaaattcaaaattgcgccagctgggcttgttttcagctgcttaaaggcttgttta
gatgatttcagtcatcacaacattgatgttgcgtgcaatcttcttgagacgtgtggtcgt
ttcctttatcgttctcctgagactaccctgcgcatggctaacatgttggagatattaatg
cgtttgaagaatgtaaaaaatttggatcctcgccatagcaccttggtggagaatgcatat
tatttgtgtaagccaccagaaagatctgctcgagtttctaaagttcgtccacccctgcat
cagtatatcaggaaattgcttttctcagatcttgataaatcttcaattgagcgcgtgctg
agacaacttcggaaactaccttggagtgaatgtgatccttaccttttgaagtgttttatg
aaggttcacaagggaaaatttggtcagattcacctgattgcatcacttactgctggcttg
agtcgttatcatgatgactttgctgttgctgttgttgatgaggttttggaggaaatcaga
cttgggttagagttgaacgattatgggatgcagcaaaggcgtattgccgacatgcgtttt
ctgggagaattgtacaactatgaacttgtggattcatctgttatttttgatactctatac
ctgatactggtttttggtcatgggacagcagagcaagatacattggatccaccagaggac
tgctttcgcatcaggatggtcatcacacttcttgaaacttgtgggcattattttgatcga
ggttcatcaaagagaaaacttgatcgattcttaatccatttccagagatacattctgtgc
aaaggtgcattaccactggatattgaatttgacttgcaggatctatttgctgaattacgc
ccgaacatgactcgatattcgtcagtcgaggaagttaatgcagctttggttgaacttgag
gagcatgagcgtgttgttgcaaccgagaaggcaaatattgacaagcattcagagactgga
aaatctcctagcaggactagttctggtgttatttctgtaaatggacaaagcattgcgaat
ggtagtgaggaaaatggtgaactgcatgatgacattgttggagagacagacagtgattct
ggtagtggaacccctgagcggatgggtcatcatgatgaagaagattcagatgaagggaat
catgatgaggagagcgagactgatgaggattatgatgacttagttggtcctgcttctgat
gaagaagatgaggtgcatgttaggcagattgctgcacaagtggatcctcaggaagcagct
gaatttgacagagaactccgtgctataatgcaggagagcttggattcaagaaaacttgag
ttgcgggctcgacctactctcaacatgatgatacctatgaatgtttttgaggggcctacc
aaagaccacttaggaaagagtactgaaggagaaagtggtgatgaggcaatagatgaagca
gcaggaggatacaaggaggttcaagtaaaggttcttgtgaagcggggtaacaagcaacaa
acaaaacagatgtcgattcctcgagattgcacccttgtgcagagcacaaaacagaaggaa
gctgctgagcttgaagagaaacaagacatcaaacggcttgttttagaatacaatgataga
gaagaagaggagcttaatgggctgggtatgcaacccctgagctggacccaaagtgcagga
agcagagtgggtaacaggggccatgcatgggaagggcacggtaggactactggatcacgt
ggtcggcatcattatatacatcattctggtggagggatgcattacagcagaagaagataa
DBGET
integrated database retrieval system
