Coffea arabica (coffee): 113709013
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Entry
113709013 CDS
T11342
Name
(RefSeq) putative pectate lyase 2
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
carb Coffea arabica (coffee)
Pathway
carb00040
Pentose and glucuronate interconversions
carb01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
113709013
Enzymes [BR:
carb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
113709013
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
113709013
NCBI-ProteinID:
XP_027087565
UniProt:
A0A6P6U9W6
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Position
9c:complement(42156354..42158052)
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AA seq
402 aa
AA seq
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MAKSGAFFLAVSWTILIDGFFFEGLVYGFQPLQAQKIHSIPQNNTNSKTQTLNAIDSCWR
SNPKWDSNRQALANCAKGFGSDALGGKNGRIYVVTDPSDDPINPKPGTLRFGAIQYEPLW
IIFQRDMVLKLENELIMNSYKTIDGRGVKVEIANGPCITIQNVSHVIIHGISIHSCTLGK
RGLVRSTPDHVGLRLGSDGDAITVFTSSHVWIDHNYLANCADGLVDVVSGSTSVTISNNY
YTQHEEVMLFGHRDGNIEDQIMKVTVVFNHFGYGLVQRIPRVRVGYAHVANNFYEPWLFY
AIGGSSNPTILSEGNYFIAPNRTDTKQVTRRDNAGGPNNWKNWNWRSLDDVFVNGAYFVQ
SGNGSCYPNYNGSQVFTVASGDLVPSLTSDAGPLKCYPGLAC
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atggccaagtctggtgcattcttcctagcggtttcatggacaatcttgatagatggattt
ttttttgagggtttggtatatggatttcaaccccttcaagctcaaaaaatacatagtatt
cctcaaaataataccaattccaaaactcagacccttaatgcaattgattcttgttggaga
tcaaacccaaaatgggattcaaatcgccaagctttggctaattgtgctaaaggttttgga
agtgatgcccttggagggaagaatggtaggatatatgttgtcaccgacccctctgatgac
cctataaatcccaagccaggtacactcagatttggtgccatccaatatgaaccgttatgg
atcatttttcaaagagacatggtccttaagctggagaacgagctgataatgaatagttac
aagactatagatggaagaggagtcaaagttgagattgcaaatggaccgtgcatcacaatt
caaaatgtcagccatgttattattcatgggattagcatccatagctgcacgctagggaaa
cgggggctggttcgaagcaccccagatcacgtcggcctcagattgggttctgatggagat
gcaattactgtattcacatcttctcatgtttggattgatcacaactatttagctaattgt
gcggacggcctcgtggatgtagtcagtggttcgacatctgtgactatctccaacaattac
tacactcagcatgaggaggtgatgctttttggacatcgagatggcaatattgaggaccaa
attatgaaggtgaccgttgtatttaaccattttggttatggattagttcaaagaattcca
agggttagggtcggctatgctcatgtagcaaacaatttctacgagccgtggcttttctac
gcgattggtggaagctcaaatccaacaatacttagcgaggggaattactttatagctcca
aaccgtactgataccaaacaagttaccaggagagacaatgctggtggtccgaacaactgg
aagaattggaattggagatccctcgacgatgtgtttgtgaatggggcttattttgttcag
tctggaaatggaagctgctaccctaattataatggatctcaagtatttactgtggcttca
ggagatttggttccttctttgacatcggatgcaggtcccctcaaatgttatcctggactg
gcgtgctga
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